Christiangramia sp. OXR-203: T8I65_04185
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Entry
T8I65_04185 CDS
T11486
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
chrn Christiangramia sp. OXR-203
Pathway
chrn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chrn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
T8I65_04185 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrn03021
]
T8I65_04185 (rpoB)
03400 DNA repair and recombination proteins [BR:
chrn03400
]
T8I65_04185 (rpoB)
Enzymes [BR:
chrn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
T8I65_04185 (rpoB)
Transcription machinery [BR:
chrn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
T8I65_04185 (rpoB)
DNA repair and recombination proteins [BR:
chrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
T8I65_04185 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WPZ00096
LinkDB
All DBs
Position
896007..899819
Genome browser
AA seq
1270 aa
AA seq
DB search
MLAKQTERLSFSSVKNKPAYPDFLDLQIKSFQDFFQLETKSEARGNEGLYNTFLENFPIT
DTRNQFVLEFLDYFVDPPRYSIQECIERGLTYSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFCINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINSVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLAEEVKVSKTGLKKYLGRKL
AARVLNTWYEDFVDEDTGEVVSIERNEIVLDRDTELEKDHIEEILETGSKTILLHKEDNQ
TGDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYSLGEV
GRYRMNKKLGLEVEMDKQVLTKLDIITIVKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVYAK
VNGMGFIETPYRSVTDGKINISEEPIYLSAEEEEGKKIAQANIPLKDDGTINTDRVIARM
EGDFPVVDPNEIHYTDVAPNQISSISASLIPFLEHDDANRALMGSNMMRQAVPLLRTDSP
IVGTGLERQVATDSRVLINAEGEGEVEYVDANKIVIKYDRTDEARMVSFDDDSKSYNLIK
FRKTNQGSCINLKPIVSVGDRVTKGQVLCQGYATEEGELALGRNMKVAFMPWKGYNFEDA
IVISEKVVRDDIFTSIHIDEYSLEVRDTKLGNEELTNDIPNVSEEATKDLDEHGMIRVGA
EVKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLSGVVINKKLFA
RAIKDKRKRAQDKEDVAALEKKYDAKFANLKAELIEKLFAIIGGKTAQGVQNDLGEEVMP
KGKKYTLKMLNAVDDYAHLTTGTWTTDDHLNELVADLLHNYKIKENDLQGNLRREKFTIS
VGDELPSGILKLAKVYIAKKRKLKVGDKMAGRHGNKGIVARIVRQEDMPFLEDGTPVDIV
LNPLGVPSRMNIGQIYETVLGWAGQKNGKKYATPIFDGATIEEINDLTDKAGIPRYGHTY
LYDGGTGERFDQRATVGVIYMLKLGHMIDDKMHARSIGPYSLITQQPLGGKAQFGGQRFG
EMEVWALEAYGASSTLREILTVKSDDVIGRAKTYEAIVKGEPMPEPGLPESFNVLMHELK
GLGLDIKLEE
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atgttagcaaagcaaactgaaagattgagtttctcttctgttaagaacaagcctgcttat
ccggactttctggatctgcagattaagtcttttcaggacttctttcaattagagacaaaa
tcagaagcgcggggaaatgaaggtctttacaacaccttcctagaaaacttccccattacg
gacacccgtaatcaatttgtactagaattcttagattattttgtggacccaccaagatac
tccatacaggaatgtatcgaacgtggattgacctacagtgtaccacttaaggctagactt
aagttatactgtaccgaccctgaacacgaagattttgaaacaatcgtacaggacgtatac
ttgggaactatcccatatatgacacctagtggaactttctgcattaacggtgctgaacga
gtagtagtttctcagctacaccgttctccaggggttttctttggacaatctttccatgca
aatggaacaaaactttattctgctcgtgtaattcctttcaaaggatcatggatagaattt
gcgaccgatatcaatagcgttatgtacgcttatattgatcgtaagaaaaaattacctgta
acaactcttttccgtgcaattggatttgagcgcgataaggatattcttgagatcttcgac
cttgcggaagaagtgaaggtgtctaaaacaggactaaaaaaataccttggtcgtaaatta
gcggctagagtacttaatacatggtacgaagatttcgtagatgaagatactggtgaagtt
gtttctatcgagcgtaacgaaattgttcttgaccgtgatactgaacttgaaaaagatcac
atagaagaaatacttgaaaccggatctaaaactatcctacttcacaaggaggataaccag
actggtgattatgcgatcattcacaatacattacaaaaggatcctactaactctgaaaaa
gaggcagtagaacatatctaccgtcagctacgtaatgctgagccgccagatgaggaaact
gctcgtggaattatcgacaagcttttcttctcagatcagcgttacagccttggagaagtt
ggtagatatagaatgaacaaaaaacttggtctagaagttgaaatggataagcaagtgctt
accaaattagacatcattaccatcgtaaaatatcttatcgagcttattaattctaaagct
gagattgatgatattgatcacttatctaaccgtcgtgttagaactgtaggtgagcagtta
tctcagcagttcggtgttggtcttgcacgtatggcaaggacaatccgtgagagaatgaac
gttcgtgataacgaggtgtttactccaatcgatttgatcaatgcgaagacattatcttct
gtgatcaactcattctttggaacaaaccagttatctcagttcatggaccagacgaaccct
cttgcagaaatcacgcacaagcgtagactttcagcattaggaccaggcggtttatcaagg
gaaagagcagggtttgaggtacgtgatgttcactatactcactacggaagactttgtccg
attgaaactcctgagggtccaaacattggtcttatttcatcactttcggtttatgctaaa
gtaaacggaatgggattcatcgagacaccatatagaagtgttactgatggtaagataaat
atttccgaagagcctatttatttaagtgctgaagaggaagaaggtaaaaagattgctcag
gccaacattcctttaaaggatgatggtactataaatacagatcgtgtaattgcacgaatg
gaaggtgacttcccggttgtagatccaaatgagatccactataccgatgttgcaccaaac
cagatatcctccatatctgcatctctaattccatttttggaacatgatgatgccaaccgt
gcgttgatgggatcaaacatgatgcgtcaggctgtaccattgttaagaacagattctcct
atcgttggaactggacttgaaagacaggttgcaacagactctcgtgtattgataaatgcc
gaaggtgaaggagaggttgagtatgttgatgcaaacaaaattgtgatcaagtacgatcgt
acggacgaagcaagaatggtaagttttgatgatgattcaaaatcttacaatcttatcaaa
ttccgtaaaactaaccagggatcctgtatcaacctgaaaccaatcgttagtgttggggac
agagttactaaaggacaggttctttgccagggttatgcaaccgaagaaggtgagctggca
cttggtagaaacatgaaggttgccttcatgccttggaaaggttataactttgaggatgcg
atcgtaatttcagaaaaagtggtaagagatgatattttcacctctatccatattgatgag
tactctcttgaagttagagatacaaaactgggtaacgaagaattgactaatgatattcct
aatgtttctgaggaggctactaaagaccttgatgagcacggaatgattagagttggtgct
gaagtaaagcctggtgatattcttattggtaagatcactcctaaaggagaaagtgatcct
actccagaagaaaaattattacgtgcgatctttggtgacaaagctggtgatgtaaaagat
gcttctcttaaagcttctccatcgctaagtggtgttgttatcaataagaaattgttcgca
agagcgattaaggacaaacgtaagagagctcaggataaagaagatgttgctgcattagag
aaaaagtatgatgctaaattcgctaatttaaaagctgaacttattgagaagctattcgct
attattggtggaaagactgctcagggagtacagaatgatcttggtgaagaagtaatgccg
aaaggtaagaagtacactcttaagatgcttaacgctgtagacgattatgctcacttaact
acgggtacatggactacagatgatcatcttaatgaacttgtagctgatcttttacataat
tataaaatcaaggagaacgatcttcagggtaaccttagaagagagaaatttaccatatct
gttggagatgaacttccatcaggaattcttaaactggctaaagtttatatcgctaagaag
cgtaaacttaaagtaggggataagatggcaggacgtcacggtaacaaaggtattgttgca
agaatcgttcgtcaggaagatatgccattccttgaggacgggacaccagtagacatcgtg
ttgaacccgcttggggtaccatcgcgtatgaacattggacagatctacgaaacagttctt
ggatgggctggacagaagaacgggaagaagtacgcaacaccaatttttgatggtgctact
attgaagagatcaatgatctaaccgacaaagccggaatacctagatatggtcatacttat
ctttatgatggtggaaccggggaaagatttgatcagcgtgcaactgttggtgtgatctac
atgcttaaacttggtcatatgatcgacgataaaatgcatgctcgttctattggaccatac
tcacttattactcagcaaccgcttggtggtaaggcacaatttggtggtcagagatttgga
gagatggaggtttgggctcttgaagcttacggagcatctagtactctaagagaaattcta
acagtgaagtctgatgacgttattggaagagctaagacttacgaggctattgtgaagggt
gagccaatgccggaaccaggattgccggaatctttcaacgtacttatgcacgaattgaaa
ggtctaggtttggatattaaacttgaagaataa
DBGET
integrated database retrieval system
