Chromobacterium sp. ATCC 53434: CXB49_02470
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Entry
CXB49_02470 CDS
T05234
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
chro
Chromobacterium sp. ATCC 53434
Pathway
chro02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
chro00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CXB49_02470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chro03021
]
CXB49_02470
Transcription machinery [BR:
chro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CXB49_02470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
Motif
Other DBs
NCBI-ProteinID:
AUH49779
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Position
562957..564885
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AA seq
642 aa
AA seq
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MAASPENQKDVQDSQQEVMSLEEQRKRLRQLIALGKERGYLTYAEINDHLPEDVSDAEQI
ENIVTMISGLGIQVYEEAPDAETLLMSDATPSVADEDAVEEAEAALSSVDSEFGRTTDPV
RMYMREMGSVELLTREGEIEIAKRIEDGLKYMIQAISACPGTIAEVLELMERVAREEIRV
DEVVDGFIDLNAPTEDDGQFAEPEDSDDLLDEEDEEDEDEEAAVDADADAAANLAELKQQ
ALEHFAGVRLLFDKMVKALNAKGSQSKEYLELQDAITTEFMLVRFATRQVESLCESLRGR
VNEIRTYERDIQDICVSRVRMDRAHFIKVFPGNETNLGWVENEIDSGKGWSEALTRFKHA
IIEKQTRLSDLQDRAMLTIKALKEINRQMSAGESKARRAKKEMIEANLRLVISIAKKYTN
RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHM
IETINKMNRISRQILQETGREPDPAELAEKMEMPEEKIRKIMKISKEPISMETPIGDDDD
SHLGDFIEDQNNLAPSDAAMYSSLKDATKEVLDTLTPREAKVLRMRFGIDMNTDHTLEEV
GKQFDVTRERIRQIEAKALRKLRHPTRSERLRSFLDNEPGGQ
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctctcccgaaaaccagaaagatgtgcaggatagccagcaggaagtgatgagc
ctggaagagcagcggaaacgcctgcgccagctgatcgcccttggcaaggagcgtgggtat
ctgacctacgccgaaatcaacgaccacctgccggaagacgtatccgacgccgagcagatc
gagaacatcgtcacgatgatctccggtctcggcattcaggtatatgaagaagcgccggac
gccgaaaccttgctgatgtccgacgccaccccgtcggtggcggacgaggatgccgtggag
gaggccgaagcggccctgtcctcggtggactccgaattcggccgcaccaccgacccggtg
cgcatgtatatgcgcgaaatgggctcggtcgagctgctgacccgcgagggcgagatcgaa
atcgccaagcggatcgaggacggcctcaagtacatgatccaggccatctccgcctgcccc
ggcaccatcgccgaggtgctggagctgatggagcgcgtggcgcgtgaagaaatccgcgtc
gacgaagtcgtcgacggcttcatcgacctgaacgccccgaccgaggacgacggccaattc
gccgaaccggaagacagcgacgacctgctggacgaagaggacgaagaggatgaggacgag
gaagcggccgtcgacgccgacgccgatgccgccgccaacctggcggagttgaagcagcag
gcgctggagcacttcgccggcgtgcgcctcttgttcgacaagatggtcaaggcgctgaac
gccaagggttcacagagcaaggaatacctggaactgcaggacgcgatcaccaccgagttc
atgctggtgcgcttcgccacccgtcaggtcgagagcctgtgcgagtcgctgcgcggccgc
gtcaacgagatccgtacctacgagcgcgacatccaggacatctgcgtcagccgcgtgcgg
atggaccgtgcccacttcatcaaggtgttcccgggcaacgagaccaatctcggctgggtt
gagaacgagatcgactccggcaagggctggagcgaggcgctgacccgcttcaagcacgcg
atcatcgagaagcagacccgtttgtccgatttgcaggacagggcgatgctgacaatcaag
gcgctgaaggaaatcaatcgccagatgtcggcgggcgagtccaaggcgcgccgcgccaag
aaggaaatgatcgaggccaacctgcgtctggtgatctcgatcgcgaagaagtacaccaac
cgcggcttgcaattcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtg
gacaagttcgaataccgtcgcggctacaagttctcgacctatgccacctggtggattcgt
caggcgatcacgcgctcgatcgccgaccaggcgcggaccatccgcatcccggtgcacatg
atcgagacgatcaacaagatgaaccgcatctcgcgtcaaatcctgcaggaaaccggccgc
gagccggatccggcggagctggccgagaagatggagatgccggaagagaagatccgcaag
atcatgaagatctcgaaggagcctatctcgatggaaacgccgatcggcgacgacgacgac
tcccatctcggcgacttcatcgaggaccagaacaacctggctccgtccgacgcggcgatg
tactccagcctgaaggacgcgaccaaggaagtgctggacacgctgacgccgcgcgaggcg
aaagttctgcggatgcgcttcggcatcgacatgaacaccgaccacacgctggaagaggtc
ggcaagcaattcgacgtgacccgcgagcgtatccgtcagatcgaggccaaggcgctgcgc
aagctgcgtcatccgacccgttccgagcggctgcgcagcttcctggacaatgagccgggc
ggccagtaa
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integrated database retrieval system
