Chromobacterium sp. ATCC 53434: CXB49_07285
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Entry
CXB49_07285 CDS
T05234
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chro
Chromobacterium sp. ATCC 53434
Pathway
chro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CXB49_07285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chro03019
]
CXB49_07285
Enzymes [BR:
chro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CXB49_07285
Messenger RNA biogenesis [BR:
chro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CXB49_07285
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
AAA_22
HI1480
P-loop_SecA
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
AUH53566
LinkDB
All DBs
Position
complement(1530392..1531639)
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AA seq
415 aa
AA seq
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MGLQPDLVQSALEQGYIQPTAIQNAAIPAILQGGDVLATAQTGSGKTAAFCLPLLQQWLA
SPRAMLRQPRALVLLPTRELAAQVGDILRDLSQALPRKLKVAVVFGGVSINPQMMALRGG
ADIVVATPGRLLDLLDHNALRLSSIKTLVLDEADRLLDLGFADELGSVMARLPPSRQNLL
FSATFPPAVRALAETLLSEPARIDIEQTADTAPDILQRAIEVDVDKRTLLLRHLLQTRDW
DRALVFVASRQAADRVADKLQRNGVAAAALHGDCSQSQRGQVLADLKSGRLRVLVATDVA
ARGIDIARLPVVVNYDLPRSPVDYTHRIGRTGRAGASGEAISFVSADCAAHFRLIEKRQR
LELPRERIAGFEPTEATIPAASLVDPDGNGGIKGKRKSKKDKLREAAARQQADEN
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
ctgggccttcagcccgacctggtccagtccgccctggagcagggctatatccagcccacc
gccattcagaacgccgccatccccgccatcctgcaaggcggcgacgtgctggccaccgcg
cagaccggctccggcaagaccgcggccttctgcctgccgttgctgcagcaatggctggcc
agcccgcgcgcgatgctgcgccagccgcgggcgctggtcctgctgcccacccgcgagctg
gcggcccaggttggcgatatcctgcgcgatctgtcccaggcgctgccgcgcaagctgaaa
gtggccgtggtattcggcggcgtatcgatcaatccgcagatgatggcgctgcgcggcggc
gcggacatcgtggtggccacgccgggacgcctgctcgatctgctggaccacaacgcgctg
cgcctgtcgtcgatcaagaccctggtgctggacgaggccgaccgcctgctggacctgggc
ttcgccgacgagctgggcagcgtgatggcccgtctgccgccgtcgcggcagaacctgctg
ttttccgccactttcccgccggcggtgcgggcgctggcggagacgctgctgagcgagccg
gcgcggatagacatcgaacagaccgccgacaccgcaccggacatcctgcagcgcgccatc
gaagtggatgtcgacaagcgcaccctgctgctgcgccacttgctgcaaacccgcgactgg
gaccgagcgctggtcttcgtcgccagccggcaagcggccgaccgggtggcggacaagttg
cagcgcaacggcgtggcggccgcagcgctgcacggcgattgcagccaaagccagcgcggt
caggtgctggccgatctgaaatcgggccgcttgcgggtgctggtggccaccgacgtggcg
gctcgcggcatcgacatcgcccggctgccggtggtggtgaactacgacctgccgcgctcg
ccggtggactacacccaccgcatcggccgaaccggccgcgccggcgccagcggcgaggcc
atcagcttcgtcagcgccgactgcgccgcccatttccgcctgatagagaaacgccagcgg
ctggaactgccgcgcgagcgcatcgccggcttcgaaccgaccgaggccaccatcccggcg
gcctcgctggtggacccggatggcaacggcggcatcaagggcaaacgcaagagcaagaag
gacaagctgcgcgaagccgcggcccgccagcaggccgacgaaaactag
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