Chromobacterium sp. ATCC 53434: CXB49_16425
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Entry
CXB49_16425 CDS
T05234
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chro
Chromobacterium sp. ATCC 53434
Pathway
chro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CXB49_16425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chro03400
]
CXB49_16425
Enzymes [BR:
chro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CXB49_16425
DNA repair and recombination proteins [BR:
chro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CXB49_16425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
CTE_SPB4
Motif
Other DBs
NCBI-ProteinID:
AUH52284
UniProt:
A0A2H5DZ22
LinkDB
All DBs
Position
3734251..3737643
Genome browser
AA seq
1130 aa
AA seq
DB search
MDTLPPLPPAGQKTRCDRLPDGLDSHAIAALAKQRRPLLILTADAQAAQRLKAELPFFAP
DLSIALFPDWETLPYDHFSPHGDLVSERLATLWQIRQRECQVVIAPVATALSRLAPVGYL
LGRTFFLKAGQQLDVEKLRGDMVTAGYQHVTQVMAPGEFSVRGSLIDLFPMGSPLPYRID
LFDAEIDSLKTFDPDTQRTLYPVPEVRLLPAREYPADESGVTAFRQHYREKIEGDPSRSR
VYKDVSQGLWPAGIEYYLPLFFDETATLFDYVGDDALLVQHHDVQAAAETFWRDAQSRYD
MARGDTERPVLPPADIFLRPDELMARLKPYARIEFSGDGDAGAALPELAVDRRADAPLHK
LQGFIASGGKRVLLAAESLGRRETMLAFLAENGIKPTPVDSWADFSDGKIALALTVAPLY
SGFALAEAAIAVVTESELYQHVARSHTRRKASRAGSDAMLRDLAEVKAGDPVVHEAHGIG
RYVGLVTMDLGEGQTELMQLEYADGATLYVPVSQLQLISRYAGGATDDIQLHKLGNPAWE
KAKKRAAEKARDTAAELLNLYAQRAAREGHSFQLSHADYSAFAAGFGFEETPDQATAIEA
VIQDMCSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLVPTTLLAEQHFQNFSD
RLADWPVRIAELSRFRSGKETKQALAGLADGGVDIVIGTHKLVQPDIEFKNLGLVIIDEE
HRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSAIATAPSRRLAVKTFVS
PLSNGVIREAVLRELKRGGQVFFLHNEVDTIENMREKLTELIPEARIGVAHGQLRERELE
QVMRDFLQQRFNLLLCSTIIETGIDIPNANTILINRADKFGLAQLHQLRGRVGRSHHQAY
AYLLTPDGMTRDAQKRLEAIQLSGELGAGFYLAMHDLEIRGAGEVLGEGQSGEMQEVGFS
LFTEMLKQAVRDLKKGRAPDLDAPLGVTTEINLHSPALLPDGYCPDVHERLLIYKRLASC
ETEAEIDAIHEELIDRFGLPPQSVKTLIESHRLRLVAKELGVQKLDASEVAVQITFIKNP
PIDPVKIIMLIQSKKHYRLAGQDKLRVEQALPEVAQRIVKVKEVLKELSA
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
ttggatacgctcccgcccctgccgcccgccggccagaaaacccgctgcgaccgcctgcca
gatggcctggacagccacgccatcgccgcgctggccaagcagcgccgtccgctgctcatc
ctcaccgccgacgcccaggccgcccagcggctgaaggccgaattgccgttcttcgcgccc
gacttgtcgatcgcgctgtttcccgactgggaaacgctgccgtacgaccacttttcgccg
cacggcgacctggtcagcgaacggctggccaccttgtggcagatccgccagcgcgagtgc
caggtggtgatcgccccggtggccaccgcgctgagcagactggcgccggtgggctacctg
ctgggccgcaccttcttcctgaaggccggccagcagctggatgtcgagaagctgcgcggc
gacatggtcaccgccggctatcagcacgtcacccaggtgatggcgccgggcgagttctcg
gtgcgcggcagcctgatcgacctcttcccgatgggctcgccgctgccgtaccggatcgac
ctgttcgacgccgaaatcgacagcctgaagaccttcgacccagacactcagcgcacgctg
tacccggtgccggaagtgcggctgctgccggcgcgcgagtatccggccgacgagagcggc
gtcaccgccttccgccagcattaccgggaaaagatcgaaggcgacccgagcaggagccgc
gtctacaaggacgtgtcgcaaggcctgtggccggccggcatcgagtactacctgccgctg
ttcttcgacgagacggcgacgctgttcgactatgtcggcgacgacgcgctgctggtgcag
caccacgacgtgcaggcggcggcggaaaccttctggcgcgacgcgcaaagccgctacgac
atggcgcgcggcgacaccgagcgcccggtgctgccgccggccgacatcttcctgcgcccc
gacgaattgatggccaggctcaagccttacgcccgcatcgaattctccggcgacggcgac
gccggcgccgcgctgccggaactggcggtggaccgccgcgccgacgcgccgctgcacaag
ctgcaaggcttcatcgcctccggcggcaaacgcgtgctgctggccgcggaaagcctgggc
cggcgcgaaaccatgctggccttcctggccgagaacggcatcaagccgacgccggtggac
agctgggccgatttctccgacggcaagatcgcgctggcgctgaccgtcgccccgctctac
tccggtttcgcgctggccgaagcggccatcgccgtggtgaccgagagcgagctgtaccag
cacgtcgcccgcagccacacccgccgcaaggccagccgcgccggctccgacgcgatgctg
cgcgacctggccgaggtcaaggccggcgatccggtggtgcacgaggcgcacggcataggc
cgctacgtcggcctggtgacgatggacctcggcgagggccaaaccgagctgatgcagctg
gagtacgccgacggcgcgacgctgtacgtgccggtgtcgcagctgcagctgatctcgcgc
tacgccggcggcgccaccgacgatatccagctgcacaagctgggcaaccctgcctgggaa
aaagccaagaagcgggccgccgaaaaggcgcgcgacaccgcggccgagctgctgaacctg
tacgcgcagcgcgccgcgcgcgagggccacagcttccagctgtcccatgccgactacagc
gccttcgccgccggcttcggcttcgaggagacgccggatcaggccaccgccatcgaggcg
gtgatccaggacatgtgctccggcaagcctatggaccggctggtctgcggcgacgtcggc
ttcggcaagaccgaggtcgcgctcagggccgccttcgtcgcggtgatgggcggcaagcaa
gtggcggtgctggtgccgacgacgctgctggccgagcagcatttccagaacttctccgac
cgcctcgccgactggccggtgcgcatcgccgaactgtcccgtttcaggagcggcaaggaa
accaagcaggcgctcgccggcctcgccgacggcggcgtcgacatcgtcatcggcacccac
aagctggtgcagccggacatcgaattcaagaacctcggcctggtcatcatcgacgaggaa
caccgcttcggcgtgcggcagaaggagcagctgaaacggctgcgcgccaatgtcgacgtg
ctgacgctgaccgcgacgccgattccgcgcacgctgtcgatggcgctggaaggcctgcgc
gacttctccgccatcgccaccgcccccagccgccggctggcggtcaagaccttcgtcagc
ccgctgtccaacggcgtgatccgcgaggcggtgctgcgcgagctgaagcgcggcggccag
gtcttcttcctgcacaacgaggtcgacacgatagaaaacatgcgggaaaagctgaccgag
ctgatcccggaggcgcgcataggcgtcgcccacggccagctgcgcgagcgcgagctggag
caggtgatgcgcgacttcctgcagcagcgcttcaatctgctgttgtgctccaccatcatc
gaaaccggcatcgacatccccaacgccaacacgatactgatcaaccgcgccgacaagttc
ggcctggcccaactgcaccagttgcgcggccgcgtcggccgctcgcaccaccaggcctac
gcctatctgctgacgccggacggcatgacccgcgacgcgcagaagcggctggaagcgata
cagctgtccggcgaactgggcgccggcttctacctggcgatgcacgacctggaaatccgc
ggcgccggcgaagtgctcggcgaaggccagtccggcgaaatgcaggaagtgggcttttcc
ctgttcaccgagatgctgaagcaggcggtgcgcgacctcaaaaaaggccgcgcgccggat
ctggacgcgcccctgggcgtcaccaccgagatcaatctgcacagtccggcgctgctgccg
gacggctactgcccggatgtgcacgagcggctgctgatttacaagcggctggccagctgc
gagaccgaggccgagatcgacgccatacacgaagagctgatcgaccgcttcggcctgccg
ccgcaaagcgtgaagacgctgatcgaaagccaccgcctgcgcctggtcgccaaggagctg
ggcgtgcagaagctggacgccagcgaggtggcggtgcagatcaccttcatcaagaatccg
ccgatagacccggtgaagatcatcatgctgatccagagcaagaagcattaccggctggcc
gggcaggacaagctgcgcgtcgagcaagcgctgccggaggtggcgcagcgcatcgtcaag
gtgaaggaggtgttgaaggagttgagcgcctaa
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integrated database retrieval system
