Chromobacterium sp. ATCC 53434: CXB49_17235
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Entry
CXB49_17235 CDS
T05234
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chro
Chromobacterium sp. ATCC 53434
Pathway
chro03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chro00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CXB49_17235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chro03019
]
CXB49_17235
Enzymes [BR:
chro01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CXB49_17235
Messenger RNA biogenesis [BR:
chro03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CXB49_17235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
HEM4
Motif
Other DBs
NCBI-ProteinID:
AUH52414
LinkDB
All DBs
Position
complement(3914836..3916212)
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AA seq
458 aa
AA seq
DB search
MLFSELGLSPEILRAIEEQGYSQPTPIQEKAIPLVLSGRDLLAAAQTGTGKTAAFMLPIL
ERLKKFANTSVSPAMHPVRALVLSPTRELADQIGVNVQSYTKYLPLRATTVYGGVNMDPQ
TQELRRGVEILIATPGRLLDHIQQKAVQFNKVEVLVLDEADRMLDMGFIQDIRKIMSMLP
KERQTLLFSATFAPEIKRLASDFMRTPQTVEVARQNATNEQVEQLVFQVDAFKKRQLLAH
LIRSREMSQVIVFCKTKISADQLARDLKRDGLDAEAIHGDKTQGTRLETLAAFKEGQLRV
LVATDVAARGLDISELPYVVNFEMPNAPEDYVHRIGRTGRAGAKGVAISLMSPEETRQHE
AIEKLTKQTLTPQSVDGFWPSWLPRPKSQSQREPQPQREPQPQREFQRQPAQQAQAPVLS
AGKGEGLKQARPGRRNRKEKREVPALLLPPRYKVEIIR
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttccgaactcggcttgtcgccggagatcctgcgcgccatcgaagagcagggc
tacagccagccgacgccgatccaggagaaggcgattccgttggtgttgtcgggccgcgac
ctgctggccgccgcgcaaaccggcaccggcaagaccgccgccttcatgctgccgattctg
gagcgactgaagaaattcgccaataccagcgtatcgccggcgatgcaccctgtccgcgcg
ctggtcttgtcgccgacgcgcgagctggccgaccagatcggcgtcaacgtgcaaagctac
accaagtatctgccgctgcgcgccaccaccgtctacggcggcgtcaatatggatccgcag
acccaggaactgcgccgcggcgtcgagatcctgatcgcgacgccgggccgactgctggat
catatccagcagaaggccgtgcaattcaacaaggtggaagtgctggtgctggacgaagcc
gaccgcatgctggacatgggcttcatccaggatatccgcaagatcatgagcatgctgccg
aaggaacgccagacgctgctgttctccgcgaccttcgcgccggagatcaagcgcctggcg
tcggacttcatgcgtacgccgcagaccgtcgaggtggcgcgtcagaatgccaccaacgag
caggtggaacagctggtgttccaggtcgacgcgttcaagaagcgccagttgctggcgcat
ctgatccgctcgcgggaaatgagccaggtcatcgtgttctgcaagaccaagatcagcgcc
gaccagctggcgcgcgatttgaagcgcgacggtctggacgccgaggccatccacggcgac
aagacccagggcacccggctggagacgctggcggcgttcaaggaaggccagctgcgcgtc
ttggtggccaccgatgtcgccgcgcgtggcctggacatttccgagctgccgtatgtcgtg
aatttcgagatgcccaacgcgccggaggactatgtccaccggatcggccgcaccggccgc
gccggcgccaagggcgtggcgatttctctgatgagcccggaggaaacccgccagcacgag
gcgatcgagaagctgaccaagcagacgctgacgccgcagagcgtcgacggcttctggccg
tcctggctgccgcggccgaagtcgcagtcgcagcgcgagcctcagccccagcgcgaacct
cagcctcagcgcgaattccagcggcagcccgcgcagcaggcgcaggcgccggtgttgagc
gccggcaagggcgaaggcctgaagcaggctcggccggggcggcgcaaccgcaaggagaag
cgcgaggtgccggcgctgctgttgccgccgcgctacaaggtcgagatcatccgttaa
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