Chryseobacterium sp. POL2: G6R40_05185
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Entry
G6R40_05185 CDS
T11017
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chrp Chryseobacterium sp. POL2
Pathway
chrp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G6R40_05185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrp03019
]
G6R40_05185
03009 Ribosome biogenesis [BR:
chrp03009
]
G6R40_05185
Enzymes [BR:
chrp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
G6R40_05185
Messenger RNA biogenesis [BR:
chrp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
G6R40_05185
Ribosome biogenesis [BR:
chrp03009
]
Prokaryotic type
rRNA helicases
G6R40_05185
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QIG89102
LinkDB
All DBs
Position
complement(1116856..1118541)
Genome browser
AA seq
561 aa
AA seq
DB search
MKLFSESSLSPDIQKAIGEMGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQFLVLCPTRELCLQITKDIKTYSKYLPNIKTTAVYGGSSIMEQIRSLR
EKPQIIVGTPGRVIDLINRKALDFSSIHWLVLDEADEMLSMGFKDDLETIISETPETKQT
FLFSATMNKEVERISKNYLTNPHRISVGSINEVKKNIKHEYFVVGYRQKKEALKRMIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISLSLIKPEESRKLKQIKAS
TKIEITEGKIPTGDDIVKAQVNGVFEKLLTENSEDIFAFDDALIPDLSQFSKEELVHKLL
QFQLKELALYYKDRNDLVEAKFNGGDDRGSRRERGRERERRGEPRERREGGRREGGRRRN
NEDMVRFFFNLGKRDQLKKVDMLEIINKATSKSKKRADIGDIEILEKFSFFEIEKSFKDE
VVKGLQTQKFKGKEMRAEVAN
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgaagttattttccgagtccagtttaagtcctgacatacagaaggcaattggcgagatg
ggctacgaaagccctacagaaatccaaaaacagactatcccatttatcttatcagatatc
cgcgatcttatcgcacttgcgcagaccgggacaggcaaaacagcggcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaatttttggtgctttgtccgacg
cgagaattatgtcttcaaattacaaaagacataaaaacttactccaagtatttaccaaac
atcaaaacaactgcggtgtatggaggtagtagtattatggagcagatccgttctttgaga
gagaaaccacaaattattgtggggactccaggacgtgtgattgaccttattaatagaaaa
gctttagatttttctagcatccattggttggtgttggatgaggctgacgaaatgttgtct
atgggtttcaaagatgatttggaaacgattatcagtgaaacaccagaaaccaaacagaca
tttttgttctcggcaacgatgaacaaagaggtagaaagaatttctaaaaactatttgaca
aatccgcaccgtatttcggttggttctattaacgaagttaaaaagaacatcaagcacgaa
tatttcgtagtgggttaccgtcaaaagaaagaagctttgaagagaatgatcgatgcgaat
cctaatcagtattcgattatcttttgccgtacaagaatggaaacgcaagaagttgcagat
ttcttaatgcaaaacggctatgcagcagatgcacttcatggcgacttgtcacaagcgcaa
cgtgatacggttatgaagaagttccgtttgaagaatatcgatattttggtagcgacagat
gttgctgctagaggattagacgtagattctttaacgcatgttattcatttctctttacca
gatgatccagaagtttttgtacacagaagtggtcgtacaggacgtgcaggtaaagatggt
atttctctatctttaataaaacctgaagaaagtagaaaactaaaacaaataaaagcttct
acaaagatagaaatcacagaagggaaaatcccgacaggtgatgatattgtgaaggcccag
gttaatggtgtttttgaaaaactattaaccgagaattctgaagatattttcgcttttgat
gatgcgttgattccagatttgtcccaattctcaaaagaggaattggtgcacaagttgtta
cagttccagttgaaagaattggctttgtattacaaagatcgtaacgatttggttgaagcc
aaatttaatggtggagatgacagaggaagccgtcgagaaagaggtagagagcgcgaaaga
agaggcgaacctcgtgagagaagagaaggcggaagacgcgaaggcggtagaagaagaaat
aacgaagatatggtgcgtttcttctttaaccttggaaaacgcgaccagttgaagaaagtt
gatatgttagagattattaacaaagccacttctaagtctaagaaaagagcagatattgga
gatattgagattttagagaaattctcattcttcgaaatcgaaaaatcttttaaagatgaa
gttgttaaaggccttcaaacacagaagtttaaaggaaaagagatgcgcgcagaagtcgca
aactaa
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