Chryseobacterium sp. POL2: G6R40_06860
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Entry
G6R40_06860 CDS
T11017
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
chrp Chryseobacterium sp. POL2
Brite
KEGG Orthology (KO) [BR:
chrp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
chrp03009
]
G6R40_06860 (rlmD)
Enzymes [BR:
chrp01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
G6R40_06860 (rlmD)
Ribosome biogenesis [BR:
chrp03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
G6R40_06860 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
Methyltransf_11
MTS
Methyltransf_15
TRM5-TYW2_MTfase
N6_N4_Mtase
TRAM
PCMT
RrnaAD
Methyltransf_4
PrmA
NpmA
Motif
Other DBs
NCBI-ProteinID:
QIG89416
UniProt:
A0A6G6YHS1
LinkDB
All DBs
Position
complement(1493002..1494411)
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AA seq
469 aa
AA seq
DB search
MKKKKNLILENIRLLSAGAKGVSVAKAEDGRTIFVSGAVPGDLVNVQVKKQKSSFYEGVA
IEILEESPDRVVPRCIHFGHCGGCKWQNMSYEKQLYFKQNEVLNNIQRIGGIKDFVCEPI
LGAEEQYFYRNKMEFSFSNARWLTPEEIKSDAELNSKDALGFHIPGQWSKILDLSTCFLQ
EDPSNEMRLFVKNFAVEHNLEFFDVRNQAGFLRTFMLRQNSKGEWMLLFQFFKEDEENRK
LLLDNVLEKFPQIKTLVYAINSKGNDSVYDLDIQTYFGDGFLYEEMDGLKFKIGPKSFFQ
TNYQQALNLYRKTLEFAELTGDEVVYDLYTGTGTIAQYIARTAKHVIGIEAVQEAIDAAK
EHAQLNGLDNCTFYCGDMKEVFTEEFLAAHPKADVLVTDPPRDGMHPKVVEQILKLSPEK
IVYVSCNSATQARDIALMKEDYELIKILPVDMFPQTHHVENIALLKKKK
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaaaaaagaatttaattttagaaaatatcagactcctttctgccggtgcgaaa
ggagtttctgttgctaaagcggaagatggaagaaccatttttgtaagtggtgccgttcct
ggagaccttgttaatgtacaagttaagaaacaaaaaagtagtttttacgaaggtgtagcc
atcgagattctcgaagaatcacccgatcgtgttgtgccaagatgcatccattttggtcat
tgtggcggttgcaaatggcaaaatatgtcttatgaaaaacaactttattttaagcaaaat
gaagtcctgaataacattcaaagaattggagggataaaggattttgtctgcgaaccaatt
ttgggtgctgaagaacaatatttttaccgtaacaaaatggagttttcgttttccaatgca
cgttggctaacgcctgaagaaataaaaagtgatgccgagcttaacagcaaagatgcttta
ggttttcatattccgggacaatggagcaaaattttggatcttagtacatgttttttacaa
gaagatccgtccaatgagatgcgcctttttgttaaaaatttcgcagttgagcataacttg
gaattttttgatgttagaaatcaagctggttttttaagaacttttatgcttcgccaaaat
tctaaaggagaatggatgttgttattccaattctttaaagaagatgaagagaatagaaag
ttgttgctggataatgttcttgaaaaattccctcagataaaaactttggtgtacgcaatc
aattctaaagggaacgatagcgtttacgatttagatattcaaacgtactttggagatgga
tttttgtacgaagaaatggatggactcaaatttaaaattggtccaaaatcattcttccaa
accaactatcaacaagctttaaacctttatcgaaaaacgctcgagtttgccgaacttaca
ggtgacgaagtggtatatgacctttatacagggacaggaactattgcacaatatattgcg
agaaccgcaaaacacgtcatcggtatcgaagccgtacaagaggctatcgatgcagcgaaa
gagcatgcacaactcaatggtttggataattgtactttctattgtggcgatatgaaagaa
gttttcacagaagagtttttagcggctcatcccaaagcagatgttttggtaacagatcct
cctcgcgacggaatgcacccaaaagttgtggagcaaattctaaaactttccccagaaaag
attgtctatgtgagctgtaattcggctacgcaagcacgagatatcgctttgatgaaagag
gattacgagttaataaaaattttaccagtggacatgtttccacagacacatcatgtggag
aatattgcactactgaaaaagaagaaataa
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