Chryseobacterium sp. PMSZPI: ACL0VS_14685
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Entry
ACL0VS_14685 CDS
T11402
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chrr Chryseobacterium sp. PMSZPI
Pathway
chrr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACL0VS_14685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrr03019
]
ACL0VS_14685
03009 Ribosome biogenesis [BR:
chrr03009
]
ACL0VS_14685
Enzymes [BR:
chrr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACL0VS_14685
Messenger RNA biogenesis [BR:
chrr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACL0VS_14685
Ribosome biogenesis [BR:
chrr03009
]
Prokaryotic type
rRNA helicases
ACL0VS_14685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
XNN37165
LinkDB
All DBs
Position
3363040..3364731
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AA seq
563 aa
AA seq
DB search
MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMKDIKTTAVYGGSSIVEQMRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQT
FLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNITHEYYVVGYRQKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHFSLPDDPEVFVHRSGRTGRAGRDGISMALIKPEESRKLKQIKSA
TKIEIHERTIPTGDDIIKAQVGGVFEKLLTEHEDLFEFDDSLIPDLSNFTKEELVHQLLQ
FQLKDLALYYKDKHDLVEQKLSSRDDDYSRRDRRDRDRGRDRDRGDRGRDRDRGGKPRRR
DENMVRFFFNLGKKDHLKKLDVLDIINKATAGGKSKKRAEIGDIEILEKFSFFEVEKSFK
DNVLSNIQSMKFKGKDMRAEVAN
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagtcctgatatccttaaggcaattggcgaactg
ggctacgaaagcccaacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgacttgatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaattattggtgctttgtccgaca
cgggaattatgtcttcagatttcgaaggacataaagaattactctaagtatatgaaggac
atcaaaacaactgcggtttatggtggaagtagtattgtagagcaaatgagatctttgaag
gataaaccacagattattgtgggaactccgggaagagtaattgatcttatcaacagaaag
gcactagacttttctgccattcattggttagtattagacgaagctgatgaaatgctttct
atgggattcaaggatgaattggaaaccatcttgagcgaaactccggaaacaaaacaaact
ttcttattctcggctacgatgaataaagaagtggaaagaatttccaaaaattatcttaca
aagccacaccgtatttcagtaggttctatcaacgaagtgaagaagaacattactcacgaa
tattatgtggtaggataccgccagaaaaaagaagcattgaaaagattaatcgatgcaaac
cctaaccagtattccattattttctgtagaacaagaatggagactcaggaggttgctgat
ttcttgatgcagaacggttatgcagctgatgcccttcatggggatctttctcaagcgcag
agagatacggtaatgaagaaattcagattgaaaaacattgatatccttgtggcaacagac
gttgcagcaagaggattggatgtaaactctctgacgcacgttatccatttttctttacct
gatgatcctgaagtatttgttcacagaagtggaagaacaggtagagcaggaagagatggt
atttctatggctctgattaagcctgaggaaagcagaaaattgaaacaaatcaaatctgct
acaaaaattgaaatccacgaaagaacaattcctacaggtgatgatattatcaaagctcag
gtaggaggtgtattcgaaaaattattgacggagcacgaagatcttttcgagtttgatgat
agcttaattccggatctaagcaactttactaaagaagaattggtgcatcagttgctgcaa
ttccaattgaaagaccttgctttatactacaaagacaagcatgaccttgttgagcagaaa
ttgagcagcagagatgacgactactcaagaagagacagacgtgacagagatagaggtcgc
gacagagacagaggagatcgtggaagagacagagatcgtggtggaaaaccaagaagaaga
gatgaaaacatggtaagattcttcttcaacttgggtaaaaaagaccacttaaagaaactt
gatgttttagatattatcaacaaagctactgctggcggaaagagcaagaaaagagctgaa
atcggtgatattgaaattttagagaaattctccttcttcgaagttgaaaaatcgtttaaa
gacaatgttttaagcaatattcaatccatgaagttcaaaggaaaagatatgagggctgaa
gtagcaaactaa
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