Chryseobacterium sp. 3008163: EAG08_16795
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Entry
EAG08_16795 CDS
T05679
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chrs
Chryseobacterium sp. 3008163
Pathway
chrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EAG08_16795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrs03019
]
EAG08_16795
03009 Ribosome biogenesis [BR:
chrs03009
]
EAG08_16795
Enzymes [BR:
chrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EAG08_16795
Messenger RNA biogenesis [BR:
chrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EAG08_16795
Ribosome biogenesis [BR:
chrs03009
]
Prokaryotic type
rRNA helicases
EAG08_16795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AYN01737
LinkDB
All DBs
Position
3607906..3609630
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AA seq
574 aa
AA seq
DB search
MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFIQSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQFLVLCPTRELCLQISKDINNYSKYMKNIKTTAVYGGSSITDQMRSLR
DKPQVIVGTPGRVIDLINRKALDFSEIHWLVLDEADEMLSMGFKDELETILRETPETKQT
FLFSATMSKEVERISKSYLTTPHRISVGSINEVKKNIKHEFYVVGYRNKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVDSLTHVIHFSLPDDPEVFVHRSGRTGRAGKDGISMSLIKPEESRKLKQIKST
TKIDIVEKKIPTGDEVISAQVKGVFEKLMTEHETIFEFDQSLVPDLSNFTKEELVVQLLQ
FQLKDFALYYKDKQDLVDQKFNNRDDDRGGRDRDSRGGRDRDRGRDRDRGDRNERSDRGE
RRGDRGGKPRQRDENMTRFFFNLGKKDQLKKLDVLEIINKATSSKGSKRAEIGNIEILEK
FSFFEVEKSFSNELIGNLQSMKFKGKDMRAEEAN
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagaccaatttaagtcctgatatccttaaggccattggcgaactg
ggttacgaaagcccgacagaaatccaaaaacagactatcccttttattcaatcagatatt
cgcgatctaatcgcacttgcgcagacagggacaggcaaaacagcagcgttttcgcttccg
attttggacatgattgacgatacgagtcgcaaaatccaatttttggtgctttgcccgaca
cgagaactatgtctacagatttcaaaagacattaacaactattcgaagtacatgaaaaac
atcaaaactacagcagtttatggtggaagcagtattacggatcaaatgcgttctttgaga
gataagccacaagtgattgtgggtactccgggaagggtgatcgacttgatcaacagaaaa
gctcttgacttctctgaaatccactggttggttttggatgaagcagatgagatgttatct
atgggtttcaaagacgaattggaaacaattttgagagaaactcctgaaacaaaacaaact
ttcttgttctcggcaacgatgagcaaagaggttgaaagaatttctaaaagttaccttaca
actccgcaccgtatttctgtgggttctattaacgaagttaaaaagaacatcaagcatgaa
ttctatgtggtaggttaccgtaacaaaaaagaagctctaaaaagactaattgatgcaaac
ccgaaccagtattctattattttctgtagaacaagaatggaaactcaggaggttgcagac
tttttaatgcaaaacggttatgcagctgatgctcttcatggtgatctttctcaagcgcag
agagatacggtaatgaagaaattcagattgaaaaacatcgatatcttggtggcgactgac
gttgcagcaagaggtttggatgttgattcattgacgcacgttattcacttctctttaccg
gatgatcctgaagtttttgtacacagaagcggaagaacaggtagagcaggaaaagacggt
atttctatgtcattgatcaagcctgaagaaagcagaaagctgaagcagataaaatctacg
acgaaaattgatatcgttgagaagaaaattcctactggtgacgaagtaatttcggctcag
gtaaaaggagtttttgaaaaactaatgacagagcacgaaactatctttgaatttgatcaa
agtcttgttcctgatttaagtaatttcactaaagaagaattggttgttcagttgctacag
ttccagttgaaagactttgctttgtactataaggacaagcaggatcttgtggatcagaag
ttcaacaacagagatgatgaccgaggtggaagagacagagacagcagaggtggaagagac
cgtgacagaggaagagatcgtgatagaggagatcgcaacgaacgtagcgacagaggtgaa
agaagaggagatcgtggtggtaagccaagacagagagacgaaaatatgactagatttttc
ttcaaccttggtaaaaaagaccagttgaaaaaactagatgtattggaaatcatcaacaaa
gctacatcaagcaaaggaagcaaaagagctgagattggaaatatcgaaattcttgagaaa
ttctctttctttgaagttgaaaaatcttttagcaatgagcttataggaaatcttcaatct
atgaagtttaaaggtaaagacatgagagctgaagaggcgaactga
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