Chryseobacterium sp. Y16C: MKS83_09115
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Entry
MKS83_09115 CDS
T11021
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
chrt Chryseobacterium sp. Y16C
Pathway
chrt02020
Two-component system
chrt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
chrt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
MKS83_09115 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MKS83_09115 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrt03021
]
MKS83_09115 (rpoN)
Transcription machinery [BR:
chrt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MKS83_09115 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
AbpB_N
Motif
Other DBs
NCBI-ProteinID:
UMQ43850
LinkDB
All DBs
Position
complement(2061930..2063393)
Genome browser
AA seq
487 aa
AA seq
DB search
MLKQHLQLKLGQKLAPQQIQLMKLIQLHTLEFEEELERELEENPALEIAKEDSKEDDYSS
LEDSYESEGTESIETDFDVNEYLYDDEPSYKTASSNYSPDDEEFDNESLLTEGQSLYDYL
MEQIHLVNISDEDVKIAEYIIGNLDTDGYLRREIKSIVDDLAFSQGIYTTKEKVEDILEN
YIQKLDPSGVGARNLQECLLLQIEKKVSSDKAVSLAANILRHQFDALTNKHYNKIIQKYD
IEEEDLKDALDEISKLSPKVGGNFDTQTITINQEIIPDFVIQVKDGQVIPMLNSKNAPTL
RVSEEYKDILSTYSHDKNSAEHKQAALFIKQKLDAAKWYIDAINQRQNTLLQTITAIVKF
QKDYFITGDEKSLKPMILKDIADITGFDISTISRVVKSKYADTPNGIVYLKDLFSDSLTN
DDGEEVSTKEIKTHLQEVIDKENKRKPLTDDALVVILKEQGYNIARRTIAKYREQLNIPV
ARLRKEL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgcttaaacaacacttacagctcaaattaggacaaaagctggcgcctcagcaaattcag
ttgatgaagttgattcagcttcatactctggagtttgaggaggaattggaaagagagtta
gaggaaaatcctgcgttggaaatagcaaaagaagactctaaggaagatgattattcttct
cttgaagattcttacgagagtgagggtacagaaagcattgaaacagatttcgatgtgaac
gaatatctttatgatgatgagccaagctataaaacagcatccagcaactactctcctgat
gatgaagaatttgataatgaaagtcttcttacagaagggcagtctttatatgattactta
atggagcaaattcatttggtgaatatttcggatgaagatgtgaaaattgcagaatatatc
atcggaaacctggatacagatggttatctgagaagggaaatcaagtcgattgtggatgat
ttggccttttctcagggaatttatacgacaaaagaaaaagtagaagatattcttgaaaat
tatattcagaagcttgatccatccggtgtgggagccagaaacctgcaggaatgccttctt
ttacagattgaaaagaaagtaagctctgataaagcagtttctttggctgccaatatttta
agacatcagtttgatgcacttaccaataagcattacaataagatcattcagaagtatgat
attgaagaagaagatttgaaggatgcgctggatgaaatatccaaactatcaccgaaagta
ggaggtaatttcgatactcagacgattactattaatcaggagatcattcccgattttgtc
attcaggtaaaagacggacaggtaattccgatgttgaacagtaagaatgcgcctacttta
agagtttctgaagagtataaggatattttatcaacgtattcccatgataagaactctgca
gaacataagcaggccgctttatttattaaacaaaaactggatgcggcaaaatggtatatt
gacgccatcaaccaacgtcagaatactttattgcagaccattactgccattgtgaaattc
cagaaggactatttcattacaggcgatgagaaatcattaaagccgatgattttaaaggat
atcgcagatattaccggttttgatatttccacaatttccagagtggtaaaaagtaaatat
gcagatactccaaatggaattgtttatcttaaagatttattctctgatagtttaacgaat
gatgatggtgaagaagtttcgacaaaagaaattaaaacccaccttcaggaagttattgat
aaggaaaataagagaaaaccattgacagacgatgcattggtggtaattttgaaagagcaa
ggctataatattgcaagaagaacgatcgcaaaatatcgtgaacagctgaatattcctgta
gcaagattaagaaaagaactctaa
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