Chryseobacterium sp. Y16C: MKS83_18945
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Entry
MKS83_18945 CDS
T11021
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chrt Chryseobacterium sp. Y16C
Pathway
chrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKS83_18945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrt03019
]
MKS83_18945
Enzymes [BR:
chrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MKS83_18945
Messenger RNA biogenesis [BR:
chrt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MKS83_18945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
Cas3-like_C_2
HEM4
P-loop_SecA
Phage_integrase
UvrD-helicase
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UMQ41448
LinkDB
All DBs
Position
complement(4176433..4177743)
Genome browser
AA seq
436 aa
AA seq
DB search
MNFTDLNLIDPIAKAIQEQGYTNPTPIQERSIPEIVKGRDFLGCAQTGTGKTAAFAIPIL
QNLSKNPKKGNHIKALILTPTRELAIQIEENIKAYGKYLPLKHLVIFGGVKQGNQEAALR
KGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPQKRQT
LFFSATMPAEIQKLADSILNNPVKVEVTPVSSTAETIKQSVYFVEREDKLNLLTHILKND
ISDSVLVFARTKHGADKIARKLQKDNITTEAIHGNKSQNARQNALNNFKSGKTRVLVATD
IAARGIDIDELKYVVNFELSDVSETYVHRIGRTGRAGAEGTSISFVDGLDLLNLRNTEKL
IGMKIPIVKDHPFHTDNLVAQKRDSNNKPVPAGAEKPKSQSSGSGSPSRKKPKNQASPAA
SLGFKKPKNKNFTRKK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttacagacttaaatttaatagatcctattgcaaaagcaattcaggaacaagga
tataccaaccctactcctattcaggaaagatcgattccggaaattgtaaaagggagggat
tttctaggatgtgcacaaacgggaacaggaaaaaccgctgcatttgccattcctattctt
cagaatctttctaaaaatcctaagaaaggaaatcatattaaagcattaatattaacccct
acgagagaattagcgattcagatagaggaaaatatcaaagcttatggaaagtacttacct
ttgaaacatcttgttatttttggaggggtaaaacagggaaatcaggaagccgccttaaga
aaaggcgtagatatcctggtggcaaccccaggaagattattagactttattgctcaaggg
attatcagcttgaaaaaccttgaaatttttgtattggatgaagctgacagaatgttagat
atgggatttgtacatgatgtaaaaagaatcatcaaacttcttcctcaaaaaagacagact
ttatttttctctgcaactatgcctgctgaaattcagaaattggcagattccattttgaac
aatcccgtaaaagtggaagttacccccgtttcatcgacggcagaaacgatcaaacaatcc
gtatattttgttgaaagagaagataaattaaatcttttgacccatattttaaagaacgat
atttccgattccgtattggtttttgccagaaccaaacacggagccgataaaattgcaagg
aaactccaaaaggataatatcacgacagaagccattcacggaaataaatcccaaaatgcc
cgtcagaatgctttaaacaatttcaaatcagggaaaacaagagtattggttgccaccgat
attgctgcgagaggaattgatattgatgaactgaaatatgtagtaaacttcgaactttcc
gacgtttccgaaacctatgtccacagaatcggaagaacaggaagagcgggtgcagaaggt
acttctatttcatttgtagacggcctggatttattaaatctgaggaacaccgaaaaattg
attggaatgaaaataccaatcgtaaaggatcatccgttccacacagataatcttgttgcc
cagaaaagggattcaaataataagcctgttccggcaggtgcagagaagcctaaatcacag
agttctggttccggctctccttcaagaaaaaaaccaaaaaatcaggcttcaccggcagct
tcgttaggatttaagaaacctaagaataagaattttaccagaaagaaataa
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