Chromobacterium sp. Rain0013: DXT74_00605
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Entry
DXT74_00605 CDS
T11521
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
chru Chromobacterium sp. Rain0013
Pathway
chru03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chru00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DXT74_00605 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chru03021
]
DXT74_00605 (rpoB)
03400 DNA repair and recombination proteins [BR:
chru03400
]
DXT74_00605 (rpoB)
Enzymes [BR:
chru01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DXT74_00605 (rpoB)
Transcription machinery [BR:
chru03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DXT74_00605 (rpoB)
DNA repair and recombination proteins [BR:
chru03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DXT74_00605 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QOZ81697
LinkDB
All DBs
Position
complement(114340..118515)
Genome browser
AA seq
1391 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRASVLDVPFLLATQIDSYTEFLQLGVPLDQRRDVGLQAAFKSI
YPIISHNGYARLDFAHYILGEPPFDVQECQLRGITYAAPLRARIRLTIFDKESSKPVVKE
VRENEVYMGEIPLMTTNGSFIINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYTNEEILSEFYSFDTFYLTKGG
VFMRVVPDRLKGEVAKFDIVAADGKLIVAKDKRITAKHIRDIQTAELDRIEVPADALLGK
VLAHNVANTDTGELIARANDEITEEVLAKLALADIQQVEVLFTNDLDQGSYISQTLRADD
IQDQLQARVAIYRMMRPGEPPTEDAVEALFQRLFFSEETYDLSRVGRMKFSSRTYQYKFD
DKTPEWFKVLIGEKFAGRRDVMEGTLSTEDIVSVIAILTELRNGRGEVDDIDHLGNRRVR
SVGELAENQFRAGLVRVERAVKERLNQAESDNLMPHDLINAKPVSAAIKEFFGSSQLSQF
MDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS
LSVFARTNEFGFLETPYRKVVDSKVTNEIDYLSAIEEGRYVIAQANAELSEEGKLIDELV
TCREKGETILATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLR
PEKALVGTGIERSVAVDSGTTVVARRGGVVDYVDAGRVVIRVNDEEATAGEVGVDIYNLT
KFTRSNQNTNINQRPIVKVGDRIARGDVVADGASTDLGELALGQNMTIAFMPWNGYNYED
SILISEKLVAEDRYTSIHIEELSVVARDTKLGPEEITRDIPNLSERMAGRLDESGIVYIG
AEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTVGTVIDVQVF
TREGIERDKRAQSIIDSELKRYRLDLNDQLRIFDNDAFSRIERLIVGKVANGGPKRLMKG
TVIDQEYLADLPSKHDWFDIRMSDEDIAKQLELIKESLAQKREEFDLKFEDKKRKLTQGD
ELPPGVQKMVKVYLAVKRRLQAGDKMAGRHGNKGVVSRILPIEDMPYMGDGRPVDIVLNP
LGVPSRMNIGQILEVHLGWAAKGIGERIDRMVKEQQSAAEIRGYLERIYNEAGKAEDIAS
LSEDEVLSLADNLRKGMPFATPVFDGAKETEIKHMLDLAYPEDDPLTQKMGFNESKTQMT
LYDGRSGEAFDRKVTVGVMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFG
EMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKVYENIVKGEHKIDAGMPESFNVLVKEIR
SLGLDMDLERY
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgagttattcgtttactgagaagaagcgtattcgtaaaagttttgcgaagcgtgccagt
gttctcgatgtcccattcctgttggcgacccagattgattcctacaccgaatttctccag
ttgggtgtgccgcttgaccagcgtagggatgtgggccttcaggctgcgttcaaatcgatc
tatccgatcatcagccacaatggctacgcgcgtctggatttcgctcattacatcttgggc
gagccgccgttcgacgtgcaggagtgccagctgcgcggcatcacttacgccgctccgctg
cgcgcgcgcatccgcctgaccattttcgataaagagtcttccaagcctgtagtgaaggaa
gtgcgcgagaacgaagtgtacatgggcgagattccgctgatgacgaccaatggttcgttc
atcatcaacggtaccgagcgcgtcatcgtttctcagttgcaccgttccccgggcgttttc
ttcgagcacgaccgcggcaagactcattcctccggcaagctgctgttctccgcccgcgtg
attccttaccgcggttcctggctggacttcgagtttgatccgaaagacctgctgtacttc
cgtattgaccgtcgccgcaagatgccggtgaccattctgctgaaggcgctgggttacacc
aacgaagaaatcctgtccgagttctacagcttcgataccttctatctgaccaaaggcggc
gtgttcatgcgcgtggtgccggatcgtctgaagggtgaagtggccaagttcgacatcgtt
gccgccgatggcaagctgatcgtggccaaggacaagcgcatcaccgccaagcacatccgc
gacatccagactgctgagctggatcgcatagaagtgccggccgacgcgttgctgggcaag
gtgctggcgcacaatgtcgccaataccgataccggtgaactgattgcgcgcgccaacgac
gagatcaccgaggaagtgctggccaagctggcgctggcggacatccagcaggtggaagtg
ctgttcaccaatgacctggaccagggctcctatatctcgcagaccctgcgcgccgacgat
attcaggaccagctgcaagctcgcgtggcgatctaccgcatgatgcgcccgggcgaaccg
ccgactgaagacgcggtggaggcgttgttccagcgcctgttcttcagcgaagaaacctac
gatctgtcgcgcgtgggccgcatgaagttcagctcgcgcacttatcaatacaagttcgac
gacaagactccggagtggttcaaggtcctgatcggcgagaagttcgccggccgtcgcgat
gtgatggaaggcacgctgtcgactgaagacatcgtttccgtgatcgccatcctgaccgag
ctgcgcaatggccgcggcgaagtggacgacatcgatcacttgggcaaccgtcgcgtgcgt
tcggtgggcgaattggccgagaaccaattccgtgccggtctggtgcgcgtcgaacgcgcg
gtcaaggagcgtctgaaccaggcggaatccgacaacctgatgccacatgacctgatcaat
gccaagccggtatccgccgcgatcaaggaattctttggttcctcgcagctgtcccagttc
atggatcagaccaacccgctgtccgagatcacccacaagcgccgcgtatcggccctgggc
ccgggcggtttgacccgcgaacgcgccggcttcgaagtgcgagacgtgcatccgacccac
tatggccgtgtatgcccgatcgaaacgccggaaggtccgaacattggtctgatcaactcg
ctgtcggtgtttgcgcgcaccaacgagttcggcttcctggaaacgccgtaccgcaaagtg
gtggacagcaaggtcaccaacgagatcgattacctgtctgcgatcgaagaaggccgctac
gtgattgctcaggccaacgccgagctgagcgaagagggcaagctgatcgacgagctggtg
acctgccgcgaaaagggtgaaaccattctggcgaccccggaccgcgtacagtacatggac
gtggccactggccaagtggtatccgttgccgcctcgctgattccgttcctggagcacgat
gacgccaaccgcgcattgatgggcgccaacatgcaacgccaggccgtgccttgcctgcgt
ccggaaaaagctctggtgggcaccggtatcgagcgctcggtggcggtagactccggcacc
accgtcgtggcgcgccgtggcggcgtggtcgactatgtcgatgccggccgtgtggtgatt
cgcgtcaatgacgaggaagcgaccgcgggcgaagtgggtgtggatatctacaatctgacc
aagttcacccgttccaaccagaacaccaacatcaaccagcgtccgatcgtgaaagtgggc
gaccgcatcgcgcgcggcgacgtggtggccgacggcgcctccaccgacctgggcgagctg
gcgctgggtcagaacatgaccatcgccttcatgccgtggaacggttacaactacgaggac
tcgatcctgatctcggagaagctggtcgccgaagaccgctacacctcgatccatatcgaa
gaactgtctgtggttgcccgcgacaccaagctgggacctgaggaaatcacccgcgacatc
ccgaacctgtccgagcgcatggccggccgtctggatgaatccggcattgtgtacatcggc
gccgaagttgaggcgggcgacgtgctggtgggcaaggtgacgcctaagggcgaaacccag
ctgacgccggaagagaagctgctgcgcgcgattttcggcgagaaggcttccgacgtgaag
gacacctcgctgcgcgtgccgaccggcaccgtgggcacggtgatcgacgttcaggtgttc
acccgcgaaggcatcgagcgcgacaagcgcgctcagtccatcattgattcggaactgaag
cgctatcgtctggacctgaacgaccagctgcgtattttcgacaacgacgccttcagccgt
attgagcgtttgatcgtgggcaaggtcgccaacggcggtccgaagcgcctgatgaagggc
actgtgatcgatcaggagtacctggccgacctgccgtccaagcatgattggttcgacatc
cgcatgtcggatgaagacatcgccaagcagctggaactgatcaaggaaagcctggcgcag
aagcgcgaagaattcgatctcaagttcgaagacaaaaagcgcaagctgacccagggcgat
gaactgccgccgggcgtgcaaaagatggtcaaggtatatctggccgttaagcgccgcctg
caggcgggcgacaagatggccggccgccacggtaacaagggtgtggtgtcgcgtattctg
ccgatcgaagacatgccgtacatgggcgacggtcgtccggtcgacatcgtgctgaacccg
ctgggcgtaccgtcgcgtatgaacatcggtcagatcctggaagtgcatctgggctgggcc
gccaagggtattggcgagcgcattgaccgcatggtcaaggagcagcagtccgccgccgag
atccgtggctacctggagcgcatctacaacgaagccggcaaggccgaagacatcgcttcg
ctgagcgaggacgaggtcctgtccctggcggacaacctgcgcaagggcatgccgttcgcc
acgccggtattcgacggcgccaaggagaccgagatcaagcacatgctggatctggcctat
ccggaagacgacccgctgacccagaaaatgggctttaatgagtccaagactcagatgacc
ttgtacgatggccgctccggcgaagctttcgaccgcaaggtcaccgtgggcgtgatgcac
tacctgaagctgcatcacctggtcgacgacaagatgcacgcgcgttccaccggcccgtac
tcgctggtgacccagcagccgctgggcggtaaggcccagttcggcggccagcgtttcggt
gagatggaggtgtgggcgctggaagcttacggcgccgcctacactctgcaggaaatgctg
accgtgaagtcggacgatgtgaccggtcgtaccaaggtgtacgagaacatcgtgaagggc
gagcacaagatcgatgccggcatgccggaatccttcaacgtgctggtgaaggaaatccgt
tcgctcggcctcgacatggacctggaacgttattga
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