Chromobacterium sp. Rain0013: DXT74_03555
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Entry
DXT74_03555 CDS
T11521
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chru Chromobacterium sp. Rain0013
Pathway
chru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DXT74_03555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chru03019
]
DXT74_03555
Enzymes [BR:
chru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DXT74_03555
Messenger RNA biogenesis [BR:
chru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DXT74_03555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_25
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QOZ82221
LinkDB
All DBs
Position
complement(778939..780366)
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AA seq
475 aa
AA seq
DB search
MSTLTFADLGLAEPLLRAVSETGYTTPTPIQAQAIPQVLQGGDLLAAAQTGTGKTAGFTL
PLLHILMGKPATQPGRPRALVLTPTRELAAQVEESVQTYGKHLPLTSMVMFGGVNINPQT
RALRKPLDILVATPGRLLDHAGQRNIDLSGVEILVLDEADRMLDMGFIHDIRKVLALLPA
KRQNLLFSATFSDEIKSLADRLLDNPKLVEVARRNTTNELVDQKIHLVDRDRKTDLLIHL
IKEHNWFQALVFTRTKHGANRLAEKLDKTGIPAAAIHGNKSQNARTRALADFKSGELQVL
VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSKGKAVSLVCVDEFNFLKD
IEKLTKQSIERFSVPGFEADLSVKPEPIPMGGGNRRGQPQRQGGGGKPRHQPDSKPTGHG
HRSPASKPRQGQGQAKNATNGQPGQRSSQGQGQGQRSKPAASRPSSALFSPPKGR
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtccacactcacctttgccgacctcggtctggccgaacccctgttgcgcgccgtcagc
gaaaccggctataccacccccaccccgattcaagcccaggccatcccgcaagtgctgcaa
ggcggcgacctgttggccgcggctcagaccggcaccggcaagaccgccggcttcaccctc
ccgctgctgcacatcctgatgggcaagccggccacccagccgggccgcccgcgcgcgctg
gtgctgacccccactcgcgaactggccgcccaggtggaagaatcggtgcagacctacggc
aagcacctgccgcttacctccatggtgatgtttggcggcgtcaacatcaatccgcaaacc
cgcgcgctgcgcaagccgctggacatcctggtggccacgccgggccgtctgctggaccat
gccggtcaacgcaatatcgacctgtccggcgttgagattctggtgctggacgaagcggac
cgcatgctggacatgggcttcattcacgacatccgcaaagtgctggccctgctgccggcc
aagcgtcagaacctgctgttctccgccaccttctccgacgagatcaagagcctggccgac
cgcctgctggacaaccccaagctggtggaagtggcgcgccgcaataccaccaacgaactg
gtggaccaaaagatccacctggtggaccgcgaccgcaaaaccgacttgctgatccacctg
atcaaggagcacaactggttccaggcgctggtgttcacccgcaccaagcacggcgccaac
cgcctggcggaaaaactggacaagaccggcatccccgccgccgcgattcacggcaacaag
agccagaacgcacgtacgcgcgcgctggccgacttcaagagcggcgaattgcaagtgctg
gtcgccaccgacatcgccgcgcgcggcctggacatcgaccaactgccgcaagtggtcaac
ttcgaattgcccaatgtgccggaagactacgtgcaccgcatcggccgcaccggccgcgcc
ggcagcaaaggcaaagcggtatcgctggtctgcgtcgatgagttcaacttcctgaaggat
atcgagaagctcaccaagcaatcgatcgagcgcttctcggtacccggcttcgaggccgat
ctgtcggtgaaacccgagcccattccgatgggcggcggcaatcgccgcggccaaccgcag
cgccagggcggcggcggcaagccgcgccaccagccggacagcaagcccaccggccacggc
catcgctccccggcgtccaagccgcgccagggacagggtcaggccaaaaacgccacaaac
ggccagcctggtcagcgctcatcgcaaggtcagggtcagggccagcgcagcaagcccgcc
gcctcgcgtccgagctcggccttgttcagcccgccgaaaggccgctaa
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