Chryseobacterium sp. T16E-39: CEY12_11630
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Entry
CEY12_11630 CDS
T04952
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chry
Chryseobacterium sp. T16E-39
Pathway
chry03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chry00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CEY12_11630 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chry03021
]
CEY12_11630 (rpoC)
03400 DNA repair and recombination proteins [BR:
chry03400
]
CEY12_11630 (rpoC)
Enzymes [BR:
chry01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CEY12_11630 (rpoC)
Transcription machinery [BR:
chry03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CEY12_11630 (rpoC)
DNA repair and recombination proteins [BR:
chry03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CEY12_11630 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl
RnfC_N
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ASK32753
LinkDB
All DBs
Position
complement(2570472..2574737)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKSSRFNKITIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPIKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHIGLVVPIAHIWYFRSLPNKIGYL
LGIPSKKLDMIIYYERYVVIQQGIAKKLDGSDFDKMEFLTEEEYLDIMETLPVENQYLDD
SDPNKFIAKMGAEAVEELLKRIDLDALSFDLRHKAHNEGSKQRRTEALKRLNVVEALRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQESVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKELSSTEDMKVK
GEGLAFYSPEEAEIAYAEGKVSLNAKVRCRLPVKEDGELVTRLIETSVGRILFNQIVPKQ
VGYINELLTKKSLRNVIGKILADTDFPTTVKFLDAMKDLGYSNAFKGGLSFSLGDIVVPV
EKKQMVAQAIGTVDEIRANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPILANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIVTEVDCGTLRGTEVTALKKNDEIVE
KISERILGRVSLHNIYDPETDELIAEADQIINEQLAKKIEETGLEAVEVRSPLTCEAKKG
ICAKCYGRNLATGKVIHMGEAVGVIGAQSIGEPGTQLTLRTFHQGGTAGNVSENPSIIAR
RDGIVEMDEVRTITSEDENGNTAEVVVSRSTEFRLVADNETRTPLMVANVPYGSVLAVKP
GDKVKKGDVICKWDPYNAVIIAETSGKVEYEDIIQGISFQLEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQRAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKAGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGERKIYLVKLSNQILVQEN
DFVRAGSPLSDGSITPDDILRIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVSIVDGGDTQFLEGALEHKYDFLEENNRVFGLKVVVDAGDSKEFKPGQMITARELRDE
NSKLKREDQNLVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVAGK
IDFLSGLKENVIVGHRIPAGTGLKEYQNVIVGSKKEFEDIN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataagtcaagtagatttaataaaataaccatcggtttagcttctccc
gaatccattcttcaggattcaagaggtgaggttttaaaaccggaaactattaactacaga
acgcataagcctgaaagagatggtttgttctgtgaaaaaatatttggtcctattaaagat
tacgaatgtgcttgtggtaagtacaagagaattcgttataaagggattgtttgtgaccgt
tgtggggttgaagttacagagaagaaagtaagaagagaaagaatcggacatattggtttg
gttgttcctattgctcacatctggtatttccgttctttaccaaacaaaattggttacctt
ttaggtattccttccaagaaattggatatgattatctattacgaaagatatgttgtgatc
caacaaggtattgctaagaaactggatggttctgatttcgataaaatggaattcttaaca
gaagaagaatatcttgatatcatggaaactcttcctgttgaaaatcaatatcttgatgat
tctgatccaaacaaattcatcgctaaaatgggtgctgaagctgttgaggaattattaaaa
agaatcgatcttgatgcattatcttttgatttgagacacaaagctcataatgaaggttct
aagcaaagaagaactgaagctctgaaaagattgaacgttgtagaagcattaagaggtgct
aatacaagaatgatcaacagaccggagtggatgattatgcgtgtacttcctgtaattcca
ccagaattaagaccattggttccattggatggaggacgtttcgctacttctgacttaaat
gacctttacagaagagttattatcagaaacaaccgtttgaagagattattggagattaaa
gctcctgaagtaatcttaagaaacgagaagcgtatgcttcaggaatcagtagattcatta
ttcgataatacaagaaaatcttcagcagtaaaatctgaatcaaacagaccattgaaatca
ctttctgattcattgaaaggtaagcaaggtcgtttccgtcagaacttattagggaaaagg
gtagattactctgcgcgttctgtaattgttgtaggtccaaacttacagcttcacgaatgt
ggtattcctaaagatatggctgcggaactttacaaaccatttatcattagaaaactaatt
gaaagaggaattgtaaaaacagtaaaatctgcaaaaagaattattgatagaaaagaacct
gtagtttatgatatcttagaaaatgtgatgaaaggtcaccctgttctattgaacagagca
cctactcttcacagactaggtatccaggctttccaacctaagatgatcgaaggtaaagca
attcaactacacccgttagtaacaacggccttcaatgccgatttcgatggtgaccagatg
gcggtacatttaccattaggtcctgaagcgatccttgaagctcagttattgatgttaggt
tctcaaaatatcttgaaccctgctaacggttctccaattacagtaccttctcaggacatg
gttcttggtctttatttcatgaccaaagaattgagttctacagaagatatgaaagtaaaa
ggggaagggttggcattctattctcctgaggaagcagaaattgcttatgctgaaggaaaa
gtttctttaaatgctaaggtaagatgtagattacctgtcaaagaagatggagaattagta
acaagattaattgaaacatctgttggtagaattttattcaaccaaattgtacctaaacaa
gtaggatatatcaatgaacttttaactaagaaatcattgagaaacgttattggtaaaatc
cttgctgatacagatttccctacaacggttaaattccttgatgcaatgaaagacttaggg
tattcaaatgcatttaaaggaggtctttcattctcacttggagatattgtagttcctgtt
gagaagaaacaaatggttgctcaggcaatcggtactgtagatgagattagagctaactat
aacatgggtcttattacagacacagaacgttataaccaggtaattgacgtttggacaaac
acgaacgctggattaactgaaatgatcatgagcagaatgaagaccgatcaaggtggattc
aactctgtatacatgatgcttgattctggtgcgaggggttctaaagaacagatccgtcag
ttatcagggatgagaggtttgatggcaaaaccgcaaaaagcaggttctactggtgcggag
atcatcgaaaacccgatccttgcaaactttaaggaaggtctttcaatccttgagtacttt
atctctacccacggtgcacgtaagggtcttgcggataccgctcttaagacagccgatgct
ggttacttaacaagaagattggtagacgttgcacaagatgttatcgttacggaagtagac
tgtggtactttaagaggtacagaagttactgccttgaagaaaaatgatgagatcgttgag
aaaatatctgaaagaattttaggtagagtttctcttcataacatctatgatccagaaaca
gacgaattaatcgctgaagcagatcagatcatcaacgagcagttagctaagaaaattgaa
gaaacaggattagaagctgttgaagttcgttctccattaacttgtgaagctaagaaaggt
atctgtgctaaatgttatggtagaaaccttgctactggtaaagtaatccatatgggtgaa
gcagtaggtgtaattggtgctcagtcaattggtgaaccaggaactcagttaacattgaga
accttccaccaagggggtactgcaggtaacgtatctgaaaatccttcaattattgctaga
agagatggtatcgttgaaatggatgaagtaagaacaattacttctgaagatgaaaacgga
aatactgctgaagtggtagtatcccgttctactgaatttagattagttgctgataacgaa
acaagaacaccattgatggttgctaacgtaccttacggttcagtattagctgtaaaacca
ggtgataaagtgaagaaaggtgatgttatctgtaagtgggatccgtataacgcggttatc
attgcagaaacttctggtaaagtagaatacgaggatattatccaaggtatttcattccaa
ctggaaattgacgaacagacaggatttgaagagaaagtaatctctgaatctagaaataag
aaagccgtacctaccttgaaggtggtagattccaaaggtgttgagcaaagagcttataac
ttaccggtaggagcccacttaatggttaatgatggtgagaaaattaaggctggtaaagtc
ttaatcaaaatcccaagaaaatctgcaaaagcaggggatatcaccggaggtcttccaaga
gtaaccgaattattcgaagcaagaaatccatcaaacccagctgtagttacagaaattgat
ggggtagtttcttacggaaaaattaagagaggtaaccgtgaacttattgtagaagctaag
actggagaaagaaaaatttacttagtaaaactttctaaccagatccttgttcaggagaat
gacttcgtaagagctggttctccactttctgatggttctattactccagatgatatctta
agaatcaaaggtccaactgcggttcaggaatatcttgtaaatgaaattcaggaagtttac
cgtctgcaaggggtaaaaattgatgataagcattttgaaattatcgtaagacagatgatg
accaaagtatctatcgttgatggaggtgatactcaattcctagaaggagctttagagcat
aaatacgatttcttagaagaaaacaacagagtatttggtcttaaggtagttgttgatgct
ggtgattctaaagaattcaaaccaggtcagatgattacagcaagagaattaagagatgaa
aactctaaattgaagcgtgaagatcaaaacttagttgaagttagagaagcacttcctgct
acagcaacacctgtattgcaagggatcacaagagcggctctacaaactaaatcattcatg
tctgcagcatcgttccaggaaacgactaaggttctaaacgaagcagcagttgctgggaaa
attgatttcctaagcggtctgaaagagaatgtaattgtaggacacagaatccctgcaggt
acaggtcttaaggaatatcagaatgtaatcgtaggttctaaaaaagaattcgaagatatt
aactaa
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