Chryseobacterium sp. T16E-39: CEY12_19805
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Entry
CEY12_19805 CDS
T04952
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chry
Chryseobacterium sp. T16E-39
Pathway
chry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEY12_19805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chry03019
]
CEY12_19805
03009 Ribosome biogenesis [BR:
chry03009
]
CEY12_19805
Enzymes [BR:
chry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEY12_19805
Messenger RNA biogenesis [BR:
chry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEY12_19805
Ribosome biogenesis [BR:
chry03009
]
Prokaryotic type
rRNA helicases
CEY12_19805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
ASK32194
UniProt:
A0A220SF94
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All DBs
Position
4345733..4347439
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AA seq
568 aa
AA seq
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MNLFTESNLSPDILKAIGEMGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQLLVLCPTRELCLQISKDIKNYSKYMQNIKSTAVYGGSSIMDQIRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILRETPETKQT
FLFSATMNKEVERISKNYLTKPHRISVGSINEVKKNIKHEYYVVGYRNKKEALKRLIDAN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISMALIKPEESRKLKQIKST
TKIDIVEKTIPTGEDIIKAQVGGVFEKLFTEHEDLFEFDDSLIPDLSKFTKEELVHQLLQ
FQLKDLALYYKDKHDLAEQKLSSRDDDYSRRDRGRDRDGRDRDRGRDRDNRSGDRGRDRG
GKPRRKNDDMVRFFFNLGKKDQLKKLDVLDIINKATAGNSKKRAEIGDIEILEKFSFFEI
EKSFKGELLNNISSMKFRGKDMRAEEAN
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggagtccaatttaagtcctgacatccttaaggcaattggcgaaatg
ggttatgaaagcccgacagaaatccaaaaacagactatcccttttattctttcagatata
cgcgacttgatcgcacttgcgcagactgggacaggcaaaactgcagcgttttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccagctattggtgctttgtccgaca
cgcgaactatgtcttcagatttctaaagacattaaaaattattctaagtacatgcagaac
atcaaaagtacagcagtatatggtgggagcagtattatggatcagatccgttctttaaag
gataaaccgcaaattattgtgggaactccgggaagagtaattgatcttatcaacagaaaa
gcacttgacttttcggctattcattggttggttttagatgaagctgacgaaatgctttca
atgggtttcaaagacgaattggaaacaattttgagagaaactcctgaaacaaaacaaaca
ttcttattctcggcaacgatgaataaagaagtggaaagaatttctaaaaattatcttaca
aagccacatcgtatttcagtaggttctattaacgaagttaagaagaatattaagcatgaa
tactatgttgtaggataccgtaacaaaaaagaagctcttaagagattaattgacgcaaat
cctaatcagtattccattattttctgtagaacaagaatggaaactcaggaagttgcagat
ttcttaatgcagaatggatatgcagccgatgctcttcatggtgatctttctcaggcgcag
agagatacggtaatgaagaaattcagattgaagaatatcgatattttggtggcaactgat
gttgctgcaagaggattagatgtaaactctttaactcacgttattcattattctttacct
gatgatcctgaagtatttgttcacagaagtggtagaacgggtagagctggaaaagacggt
atttctatggctttaattaagcctgaagaaagcagaaagctaaaacagatcaaatcaaca
acgaaaattgatatcgttgaaaaaactatccctacaggagaagatatcattaaagctcag
gttggtggagtttttgaaaaactattcactgaacatgaagatttgtttgaatttgatgac
agcttgattcctgatcttagtaagtttacaaaagaggaactggtacatcagttattgcag
tttcagctaaaagatcttgctttgtactacaaagataaacatgatcttgccgagcagaaa
ttaagcagtagagacgatgattactcaagaagagacagaggtcgtgatagagatggaaga
gacagagatagaggaagagatcgcgataacagaagtggagacagaggaagagatcgtggt
ggaaaaccaagaagaaagaatgatgatatggtaagattcttcttcaatcttggaaaaaaa
gaccaattgaagaaactggatgttttagatattatcaataaagcgactgctggaaacagt
aaaaaaagagctgaaattggggatattgaaattttagagaaattttcattctttgagatt
gaaaaatcatttaaaggagaacttttaaataatatttcttcaatgaaattcagaggaaaa
gatatgagagctgaagaggctaattaa
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