Chryseobacterium sp. T16E-39: CEY12_19845
Help
Entry
CEY12_19845 CDS
T04952
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chry
Chryseobacterium sp. T16E-39
Pathway
chry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEY12_19845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chry03019
]
CEY12_19845
Enzymes [BR:
chry01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEY12_19845
Messenger RNA biogenesis [BR:
chry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEY12_19845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
AAA_30
Helicase_C_2
AAA_22
P-loop_SecA
Cas3-like_C_2
Flavi_DEAD
HEM4
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ASK32202
LinkDB
All DBs
Position
complement(4353918..4355174)
Genome browser
AA seq
418 aa
AA seq
DB search
MLFTDLKIIKPILDALQKEGYEKPTPIQQKAIPSILEKKDLLGTAQTGTGKTAAFAIPIL
QNLAERPKSNQIKALILTPTRELAIQIEESFNAYGRNLPLRKLVIFGGVKQGSQEAALRK
GIDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPQRRQTL
FFSATMPPEIQKLAGSILNNPVQVEVAPVSSTAETIKQSVYFVQKEDKLGLLTHILKDHI
SESVLVFSRTKHGADKIARTLQKSGISAEAIHGNKSQNARQNALNNFKSGKTRVLVATDI
AARGIDIDELKYVINYELSDVSETYVHRIGRTGRAGAEGTSLSFVDGLDLLNLRNTEKLI
GLKIPVVKDHPFHTENLVAQKRDSNNKPVNPGQARPKPTQKKDVGFKKPKNKSFFRKK
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
ttgttatttacagatttaaaaatcattaagcccattttagatgcgcttcaaaaggaaggt
tatgaaaaaccaactcctatacaacaaaaagctattccttctattttagagaaaaaagat
ctattgggaacagcgcaaacgggaacaggtaagaccgcagcttttgctattcctattctt
caaaaccttgcagaacgtccaaaaagcaatcagataaaagctttaattctaactccaacg
agagagctagctatacagattgaagagagttttaatgcttatggaagaaaccttccttta
agaaaattagtgatcttcggaggggtaaaacaaggttctcaggaagctgctttaagaaaa
ggaatagacattctggtagcaacaccgggtagattactcgattttattgcccagggaatt
atcagccttaaaaatctggaaattttcgttcttgatgaagcggacagaatgttggatatg
gggtttgtacatgatgtaaaaagaattataaaacttttaccacaacgaagacaaacttta
tttttctcggcaacgatgcctcctgaaatacaaaaactggcaggttctatcctaaacaac
ccagtacaggtggaagtagcccctgtttcttcaaccgcagaaactattaagcagtctgta
tactttgtgcagaaagaggacaaattaggccttcttacccatattctgaaagaccatatt
tccgaatcagttttggttttctcaagaaccaaacatggagccgataaaattgcaagaacg
cttcaaaaaagtggcatctctgcagaggctattcatggaaataaatctcaaaatgcacgt
cagaatgcattgaataatttcaagtccggaaaaaccagagttttggttgctacagatatt
gccgcaagaggaattgatattgatgagttgaaatatgtaatcaactatgagctatccgat
gtttccgaaacctatgttcacagaatcggaagaaccggaagagcgggtgcggaaggaact
tctttatcatttgtagatggtctggacttattgaacctaagaaacacggaaaaattaatc
ggtctcaaaattccggtggtaaaagatcatccattccacacggagaatcttgtagcacaa
aaaagagattctaataacaaacctgttaatccaggccaggcaagacctaagccaacacaa
aagaaagatgtaggctttaaaaaacctaagaataaaagctttttcagaaagaaataa
DBGET
integrated database retrieval system
