Chryseobacterium sp. 6424: CO230_04390
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Entry
CO230_04390 CDS
T05704
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chrz
Chryseobacterium sp. 6424
Pathway
chrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO230_04390 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrz03019
]
CO230_04390 (recQ)
03400 DNA repair and recombination proteins [BR:
chrz03400
]
CO230_04390 (recQ)
Enzymes [BR:
chrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CO230_04390 (recQ)
Messenger RNA biogenesis [BR:
chrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CO230_04390 (recQ)
DNA repair and recombination proteins [BR:
chrz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CO230_04390 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ-1-like_HTH
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
AYO57429
UniProt:
A0A3G2TBD9
LinkDB
All DBs
Position
949922..952126
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AA seq
734 aa
AA seq
DB search
MKKNTADLSKELKKYFGFSTFKGQQEEIIKNLLQGKDIFVLMPTGGGKSLCYQLPALISE
GTAIVVSPLIALMKNQVDAVNGLSSDEGVAHVLNSSLNKSQTKQVFDDIKSGKTKLLYLA
PESLIKEDYLEFLREVKISFVAIDEAHCISEWGHDFRPEYRNLKLIIDKIADVPVIALTA
TATPKVQDDIQKTLGMSNALVFKESFNRPNLFYEVRPKVNIDREIVKFINQHKGKSGIVY
CLSRRKVEEFAQLLQVNGINALPYHAGLDQKTRVANQDKFLMEEADVIVATIAFGMGIDK
PDVRFVIHYDIPKSLESYYQETGRAGRDGGEGYCLAFYDPKDIEKLEKFLAQKPVSEREI
GLQLLNEVVGYAETSMSRRQYILYYFGEHFDPVNGAGAQMCDNSVNPPTLKDASAELKQV
LTLVKDFEEKFKTKDLLAVIVGKENSVTKSYKLDASKHFGFGKNQPENFWKTIIRQATVQ
NFLQKDIETYGVLKLTPKGLEVISGNHDEPFMIAEDRQYDLAQTKADSGAAQPTAGSGLD
EVLFTQLKELRKKVAKTHGIPPYTVFMDPSLEDMTVQYPVTIEEISKIYGVGEGKARRYG
KAFADFIRQYVEENNIERTQDMVLKQVANKSSHKVFIIQSTDKKIDLEDIAKAKNLSMDD
LLKEMERIVYQGTKLNIDYYIDENFDEDIVEEFMTFMGESESDSMKVLLAEFGDDLTDEE
VRMLRIKFISDVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaatactgccgatttatcgaaagaactcaaaaaatatttcggcttttcaaca
tttaaaggacaacaggaagagattatcaaaaatttactacagggtaaagatattttcgtg
ctgatgcctaccggtgggggaaaatcgctttgttatcagcttcctgcgctgatttccgaa
ggaactgccattgtggtttcgcctcttattgccctcatgaaaaatcaggtagatgccgtt
aacgggctttcttctgatgagggtgtggcccatgttctcaattcgtccctaaataaatcg
cagaccaaacaggtgtttgatgacatcaagagtggtaaaaccaaattgctgtacttagcc
cccgaatccttgattaaagaagattatctggagtttctgcgtgaagtgaaaatctctttt
gtcgccattgatgaagcccattgtatctcagaatggggacacgatttccgcccggaatac
cgaaacctcaaactgattattgataagatcgccgatgttcccgtcatcgcacttaccgcc
acagcgacaccgaaagtgcaagatgatatacagaaaaccctcgggatgagcaacgctttg
gtgttcaaagaaagcttcaaccgcccgaatctcttttatgaggtaagaccaaaagtaaat
atcgaccgcgagattgtaaaattcatcaatcagcataaaggtaaatctggcatcgtgtat
tgcctcagccgccgcaaggtggaggagttcgcgcaactgcttcaggtaaacggcatcaat
gccttaccttatcatgcaggtcttgaccagaaaacgcgcgttgccaaccaagataagttt
ttgatggaggaggctgatgtgatcgtcgctaccattgctttcgggatggggattgataaa
cccgacgtgcgtttcgtaatccattacgatattccaaagtcactcgaaagttattatcag
gaaactggccgtgcgggtcgcgatggcggcgaaggctactgcctcgcattttatgatccg
aaagacattgaaaaactcgagaagttccttgcgcaaaagcccgtgtcagaaagggaaatc
ggtttgcaactcctcaatgaagtcgtaggatatgcagaaacctccatgagtcgtcgccag
tatattctttattattttggcgagcacttcgatccggtgaatggtgcgggcgcgcagatg
tgcgataattccgtcaatccacccacccttaaagacgcttctgcggaactaaaacaggtg
ctgactttagtgaaggattttgaagaaaaattcaaaaccaaagatttgcttgccgttatt
gttggtaaagaaaattcggtgaccaaatcctataagcttgatgccagcaaacatttcggt
ttcgggaaaaaccagccggagaatttctggaaaaccatcatccgtcaggcaacagtacag
aatttcctgcaaaaagatatcgaaacttacggtgtgctgaaacttaccccaaaagggtta
gaagtaatctctggcaaccatgacgagccgttcatgattgcggaagacaggcaatatgat
ctcgcccagacaaaagccgacagcggagcggcgcagccgacagcgggcagcggacttgat
gaggtgttgtttacacaattgaaggaacttaggaaaaaagtcgctaaaacacatggcata
ccaccttacacggtgtttatggatcccagtttggaggacatgacggtgcagtaccctgtc
acgattgaagaaattagcaagatctacggtgtaggcgagggcaaagcaagaagatatggt
aaagctttcgccgatttcatccgccagtatgtggaggaaaacaatatcgaaagaacccag
gacatggtgctgaaacaggtggcgaataagtccagccacaaagtgttcatcatccaaagc
actgataagaaaattgaccttgaagacattgcgaaagccaaaaatctttcgatggatgat
ttgcttaaagaaatggaacgcatcgtatatcaggggaccaagcttaatattgattattac
attgatgagaatttcgatgaggatattgtcgaagagttcatgaccttcatgggagaaagc
gaaagcgacagcatgaaagtgctgctggccgagtttggcgacgaccttacggatgaagag
gtacgtatgctgcgcatcaaatttatttcagatgtggccaattaa
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