Chryseobacterium sp. 6424: CO230_05815
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Entry
CO230_05815 CDS
T05704
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
chrz
Chryseobacterium sp. 6424
Pathway
chrz03030
DNA replication
chrz03430
Mismatch repair
chrz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CO230_05815 (holA)
03430 Mismatch repair
CO230_05815 (holA)
03440 Homologous recombination
CO230_05815 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chrz03032
]
CO230_05815 (holA)
03400 DNA repair and recombination proteins [BR:
chrz03400
]
CO230_05815 (holA)
Enzymes [BR:
chrz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CO230_05815 (holA)
DNA replication proteins [BR:
chrz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CO230_05815 (holA)
DNA repair and recombination proteins [BR:
chrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CO230_05815 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delta_C
HP_1247_M
Motif
Other DBs
NCBI-ProteinID:
AYO57681
LinkDB
All DBs
Position
1233902..1234939
Genome browser
AA seq
345 aa
AA seq
DB search
MKELDLILKSIKNKELLPIYFFHGEEPYFIDVALKSFENDVLEEDEKAFNQTVVYGKDTT
FGEVLSLARQFPMMGDRQVIILKEAQEIKMTEKDAEALKAYAENPVPSTVLIIAHKYKKV
DARKAFAKILSKNKMLFVSDKMRDYEVPKWIEQELKNIGLKSKPHIPALLSEYLGTDLSR
ISNELNKLKMILKDTDILDEKIIETHIGISKDFNIFELTKALAGKEEARAMRIAYYLGKS
PKQNPFEMMMGSLYSFFSNLIMYHTMAGQNPKAIQEELRLNYYQAQDMAAAARKYSLKHS
TRIISVLREFDLKRKGLGAVNMDETELMTEMVYKILHVGELKVRT
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaattagatttaatcctcaaaagtatcaaaaataaagagttattgccgatttat
ttttttcatggcgaggaaccttattttatagatgtagcgctgaaatcttttgagaatgat
gttttggaagaggatgagaaagcctttaaccaaacggtggtctatggcaaagacaccact
tttggcgaggtactgtccctggcgcggcagtttccgatgatgggcgaccgccaggtgatc
atcctgaaagaagcacaggaaatcaaaatgaccgaaaaagacgctgaagcactgaaagcg
tacgctgagaatccggtcccgtccactgtgctcatcattgcacataaatacaagaaagta
gatgcccgaaaagcttttgccaaaatcctcagcaagaacaaaatgctctttgtcagcgac
aagatgcgcgattacgaagtgccgaaatggattgagcaggaacttaagaatattggttta
aaatcaaaaccgcacatcccggcgttgctgtccgaatatctgggcaccgatctttcaaga
atctccaacgagttgaataaactgaagatgatcctgaaagacaccgatatcctggatgaa
aagattattgagacacacatcggcatcagcaaggattttaatatcttcgaacttaccaag
gcgctggcaggcaaagaagaggcacgcgccatgcgcattgcctattatctgggcaaaagt
cctaagcaaaaccctttcgagatgatgatgggttcgctgtacagttttttctctaatctg
atcatgtatcatacgatggcaggccaaaaccctaaagccatacaggaagaattgcggctg
aactactatcaggcacaggatatggcggcggcggcccgcaaatactccttgaaacacagt
acgaggatcatctctgtgctgcgcgaattcgatctgaaaaggaagggcctgggtgccgtg
aacatggatgaaaccgaactgatgacagaaatggtgtacaaaatcctgcatgttggcgaa
ctgaaagtgagaacctga
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