Chryseobacterium sp. 6424: CO230_09680
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Entry
CO230_09680 CDS
T05704
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chrz
Chryseobacterium sp. 6424
Pathway
chrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO230_09680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chrz03019
]
CO230_09680
03400 DNA repair and recombination proteins [BR:
chrz03400
]
CO230_09680
Enzymes [BR:
chrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CO230_09680
Messenger RNA biogenesis [BR:
chrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CO230_09680
DNA repair and recombination proteins [BR:
chrz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CO230_09680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
PHY
KH_GLD-3_2nd
Motif
Other DBs
NCBI-ProteinID:
AYO58365
UniProt:
A0A3G2TEB3
LinkDB
All DBs
Position
complement(2073166..2075076)
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AA seq
636 aa
AA seq
DB search
MFPAQEYRQLIRQTLQHFWGHGNFRDLQEEIITAVISRKDTLALLPTGGGKSLCYQLPAL
ISEGTCIVISPLLALMKDQVSQLKNRGIEAEYLSSELEDFEAEIIYNSCKEGITKLLYVS
PERLTNRIFIQNLEEIAISFLAVDEAHCISEWGQDFRPSYQNIKDFRRHFGNIPCLALTA
TATPKVLQEIQIKLNLKDPQLFKKSFRRTNIRIISDKIADKYQRLLDLMRHNVASGIIYV
RTRKESEELVAFLRKNQIQNVDFYHAGLPAKEKNARQRQWLNSNSHVLISTNAFGMGIDK
DNVRFVMHFSPPQSLENYYQEIGRAGRDGSDSFAFLLWNEQELDNFDKILRNQIPSKKEF
SAIVSYLYSGFQIAENDLPEQVFQLHLHRIQHFTKSSLAKIKNVLNFLHTQEIIFLNTHR
SLSSLELKISPNELDLLAKNDAYFIELLLRNYPGLATHKILFSELTLSRKTDTDVHLIKE
RIKDIQQKGYVEYIDGALASVKFLRPRDERSNNGRYWGLFEQIQKNKLQKWEEMKFFVQH
TEYCKMKMILSYFGEKNVRNCGTCSVCERQRESVFGRDIGQEIIQTLKVRPSTVEEIAIQ
LNYHQKETILENLIHLLDSGEVKMLNFRTYCYSGNT
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgtttccagcgcaagaatatcggcagttgatccgtcagacccttcagcacttctggggg
catggtaacttccgcgatttgcaggaagagattatcaccgcggtaatatcccgtaaagac
acgcttgctttgttacctaccggcggcggcaaatcattatgttatcagttgccggcactt
atttcagagggtacgtgcatcgtcatctcaccactgctggcactcatgaaagatcaggta
agccaactcaaaaaccgaggtattgaagcggaatatctttcttcagaacttgaggatttt
gaggcagaaatcatctacaactcttgcaaagaaggaattactaagctgttatatgtttct
cctgaacgacttacaaacaggatctttattcagaatttagaggaaattgcgatttccttt
ctcgccgtagatgaggcccactgtatttcagaatggggacaggacttccggccaagctat
cagaatatcaaagatttccggcgtcatttcggcaatataccatgtctggcacttaccgca
accgccaccccaaaagtgcttcaggaaatccagataaaactcaatcttaaggatccccaa
ctcttcaaaaaaagtttcagaagaaccaatataaggatcatcagcgataagatagcagat
aaatatcagcggctgctcgatttgatgcggcacaatgtcgcttcaggtatcatttatgta
agaacacgtaaagagagtgaagagttggtcgccttcctgcgcaaaaaccagatacagaat
gtagatttttaccatgcggggcttccggcaaaagaaaaaaatgccaggcaaagacaatgg
ctgaacagcaacagccatgtattgatttctaccaatgcatttgggatgggcatcgataaa
gataatgttcggtttgtgatgcatttttcgccaccgcaatcgctggagaattactatcag
gaaatcgggcgcgctggccgagacggaagcgattcttttgcctttctactctggaatgag
caggagctcgataactttgataagattttaagaaaccaaatcccatccaaaaaagagttt
tcggctattgtttcttatctgtattctggttttcaaatcgccgaaaacgacttgcctgaa
caggtttttcagcttcaccttcaccgcatccagcattttacaaaatcctcgttggcaaag
attaaaaatgtgcttaattttctgcacacacaggaaattatcttcctcaatacccaccgg
tctttgtcttcgctggaacttaagatttcgccgaatgagcttgatcttctggctaagaat
gatgcgtatttcattgagttgctgttgcgtaactatcctggtttggccacacacaagata
ctcttcagcgaacttactctaagccgtaaaaccgatacagatgtacatctgattaaagaa
cgtattaaagatatccagcaaaaaggttatgtggaatatattgatggcgccttagccagc
gtgaagttcctgagaccgcgtgacgagcggtctaataacggaagatattggggccttttt
gaacagatacagaaaaacaaactgcaaaaatgggaggagatgaagttctttgtacaacat
acggagtactgcaaaatgaaaatgatcctgtcttatttcggtgaaaaaaatgtgcgtaac
tgcggtacctgctctgtatgcgaaagacagcgcgaaagtgttttcggccgcgacatcggt
caggaaatcatacagacgcttaaagtaagaccctccactgtagaagagattgccatacag
ctaaattatcaccagaaagaaactattcttgaaaatcttatccatctgcttgattcgggt
gaggtaaaaatgctgaatttccgtacctactgttacagcggaaacacctaa
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