Chryseobacterium sp. 6424: CO230_10255
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Entry
CO230_10255 CDS
T05704
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
chrz
Chryseobacterium sp. 6424
Pathway
chrz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chrz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CO230_10255 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrz03021
]
CO230_10255 (rpoC)
03400 DNA repair and recombination proteins [BR:
chrz03400
]
CO230_10255 (rpoC)
Enzymes [BR:
chrz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CO230_10255 (rpoC)
Transcription machinery [BR:
chrz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CO230_10255 (rpoC)
DNA repair and recombination proteins [BR:
chrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CO230_10255 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
Biotin_lipoyl
RPOC_hybrid
RnfC_N
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
AYO58466
UniProt:
A0A3G2TED2
LinkDB
All DBs
Position
complement(2182132..2186397)
Genome browser
AA seq
1421 aa
AA seq
DB search
MSNKNKTSNFSKITIGLASPESILQDSRGEVLKPETINYRTHKPERDGLFCEKIFGPVKD
YECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERIGHIGLVVPVAHIWYFRSLPNKIGYL
LGLPSKKLDMIIYYERYVVIQAGIAKKPDGSDFDDKEFLTEEEYLDIMDTLPAENQYLDD
SDPNKFVAKMGAEAVEELLKRIDLDTLSFDLRHKAHNESSKQRRTEALKRLNVVEAIRGA
NTRMINRPEWMIMRVLPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLLEIK
APEVILRNEKRMLQEAVDSLFDNTRKSSAVKSESNRPLKSLSDSLKGKQGRFRQNLLGKR
VDYSARSVIVVGPNLQLHECGIPKDMAAELYKPFIIRKLIERGIVKTVKSAKRIIDRKEP
VVYDILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLVTTAFNADFDGDQM
AVHLPLGPEAILEAQLLMLGSQNILNPANGSPITVPSQDMVLGLYFMTKEASSTDEVKIK
GEGLAFYSPEEVEIAYAEGQVSLNAKVRCRLPVKENGEITTKLIDTTVGRILFNQIVPKQ
VGYINELLTKKSLRNVIGRILADTDFPTTVKFLDDMKDLGYSNAFKGGLSFSLGDIVIPE
EKKTMIEQAVENVDEIKANYNMGLITDTERYNQVIDVWTNTNAGLTEMIMSRMKTDQGGF
NSVYMMLDSGARGSKEQIRQLSGMRGLMAKPQKAGSTGAEIIENPIVANFKEGLSILEYF
ISTHGARKGLADTALKTADAGYLTRRLVDVAQDVIITEDDCGTLRGTEISPLKKNDEIVE
RLAERILGRVSLHNVYDPETDEVLANADELIDESLARKIENAGIELVEVRSPLTCETKKG
ICAKCYGRNLATGKPIHMGEAVGVIAAQSIGEPGTQLTLRTFHQGGTAGNISENPSIVAR
RDGIVEMDEVRTVTSENEEGKTAEILVSRSTEFRLVADNAARTPLMVANVPYGSELLVKP
GDKVKKGDTIAKWDPYNAVIIAESAGKVEYEDIIQGVSFALEIDEQTGFEEKVISESRNK
KAVPTLKVVDSKGVEQKAYNLPVGAHLMVNDGEKIKAGKVLIKIPRKSAKSGDITGGLPR
VTELFEARNPSNPAVVTEIDGVVSYGKIKRGNRELIVEAKTGEISKYLVKLSNQILVQEN
DFVRAGSPLSDGSITPDDILKIKGPTAVQEYLVNEIQEVYRLQGVKIDDKHFEIIVRQMM
TKVEIVDGGDTQFLEGALEHKFDFLEENNRVFGLKVVTDAGDSKEFKPGQMITARELRDE
NSKLKREDLALVEVREALPATATPVLQGITRAALQTKSFMSAASFQETTKVLNEAAVSGK
VDYLTGLKENVIVGHRIPAGTGLKDYQNIIVGSKKEFEDIN
NT seq
4266 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataaaaataaaacaagtaatttcagtaaaattacgatcggtcttgcttcacca
gagtccattcttcaggattcaagaggagaagttttaaagcccgaaaccatcaactacaga
acccacaagccagaaagagacggtttgttctgcgagaaaatcttcggtcctgttaaggat
tacgaatgtgcctgcggaaaatacaagcgtatccgttataaaggaatcgtttgtgaccgt
tgtggggtagaggttaccgagaaaaaagttcgtagagagcgtatcggccatattggtttg
gtagttcctgtggctcacatctggtatttccgttcgttaccaaataaaatcggatacctt
ttaggtttaccttccaagaaactcgacatgattatctattatgaaagatatgtcgttatc
caggcaggtatcgctaaaaaaccagacggttcagacttcgatgataaagaattcttaaca
gaagaagagtacctggatatcatggatacccttcctgcagaaaaccaatatctggatgat
tctgatcctaataaattcgttgctaaaatgggagcggaggcagtagaagaattgttaaag
agaatcgatcttgatactctttccttcgacctacgtcacaaagcacacaacgagtcatca
aaacaaagaagaacagaagcattaaaaagattaaatgttgttgaagccatccgtggtgca
aacaccagaatgattaaccgtccggaatggatgattatgcgtgttcttccagtaatacca
ccagaattgagaccattggttcctttggatggtggacgttttgcaacttctgatttaaat
gatctttaccgtcgtgtaatcatcagaaacaaccgtttgaagagacttttagagatcaaa
gctcctgaagtaatcttaagaaacgagaagcgtatgcttcaagaggcggtagattctctt
ttcgataataccagaaaatcttcagcggtaaaatctgaatctaacagaccattgaaatcg
ctttcagattcattgaaaggaaagcaaggtcgtttccgtcaaaacttattgggtaaacgt
gtagattactcggcgcgttcggtaattgttgtaggtccaaaccttcaacttcacgagtgt
ggtatcccaaaagatatggcagcagaactttacaaaccgtttatcattagaaaactaatc
gaaagaggtattgtaaaaactgtaaaatcagcaaaaagaatcattgacagaaaagaacct
gttgtatatgatatcttagaaaacgtgatgaaaggtcacccggttcttctaaacagggca
cctacgcttcacagacttggtatccaggcctttcagccaaaaatgattgaaggaaaagcg
attcagcttcacccattggtaactacggcattcaacgcggatttcgatggtgaccagatg
gcggtacacttaccattagggccagaagccatccttgaagctcagttattaatgctaggt
tctcagaatattttgaaccctgcaaatggttctcctattaccgtaccttctcaggacatg
gtattgggtctatatttcatgaccaaagaagcctcttcaacggacgaagttaaaattaaa
ggagaaggtcttgcattctattcacccgaagaagtagaaatcgcttacgcagaaggacaa
gtttccttaaatgcaaaagttagatgtcgtcttccggttaaagaaaatggtgagattact
actaaacttattgatacaactgttggtagaattttattcaaccaaattgtaccaaagcag
gtaggttatatcaacgaacttcttactaagaagtctttgagaaatgtaattggtagaatc
ttagcagacaccgacttcccaactacggtgaagttcttggatgatatgaaagacttaggt
tattcaaacgcattcaagggtggactttcgttctctttgggtgatattgtgattccggaa
gaaaagaaaactatgatcgagcaggcggtagaaaacgtagacgaaattaaggccaactat
aacatgggtcttattacagatacagaacgttataaccaggtaattgacgtttggaccaac
accaacgccggattgaccgagatgattatgagcagaatgaaaaccgaccaaggtgggttc
aattcagtttatatgatgcttgattccggtgcgaggggttccaaagaacagattcgtcag
ctttccggaatgcgtggattgatggccaagcctcaaaaagcaggttctacaggcgcggaa
attattgaaaacccgattgtagcgaactttaaggaaggtctttcaattcttgagtacttt
atctccacccacggtgcacgtaaaggtcttgcggataccgctcttaaaactgccgatgct
ggttacctgaccagaagattggtagacgttgcgcaggatgtcatcatcactgaagacgac
tgtggaactttaagaggtactgaaatctctccgttaaagaaaaacgacgaaatcgtagag
cgacttgccgaaagaatcttaggtagagtttctttacataatgtgtacgatcctgaaaca
gatgaagttcttgccaatgctgacgaattgatcgatgaatcattagcaagaaaaatcgag
aacgcaggtattgaactggtagaagttcgttcaccattgacctgtgagaccaaaaaagga
atctgcgcgaaatgttacggacgtaaccttgcgacaggtaaaccaattcatatgggtgaa
gctgttggggttatcgctgcacagtctattggtgaaccgggaactcagcttacgctgaga
accttccaccagggtggtaccgcgggtaacatctctgaaaatccatcgatcgttgcacgt
cgcgacggtatcgtggaaatggacgaggtgagaaccgtaacttctgaaaatgaagaaggt
aaaactgctgaaatccttgtttcgcgttcaactgaattccgtttggttgctgataatgct
gcacgtacgccgctgatggtagctaacgtaccttatggttccgaactattggtgaaacct
ggcgataaagtgaaaaaaggcgataccattgcgaaatgggatccgtataacgcggtaatc
attgctgaatctgccggtaaagtagagtacgaggacatcattcagggggtttcattcgcg
ctggagatcgatgagcagacaggtttcgaggagaaagtaatttcagaatccagaaacaag
aaagccgtacctaccctgaaagtagtagattctaaaggtgtagagcaaaaagcctacaac
cttccggtgggtgcccacttgatggtaaatgatggcgagaaaatcaaggccggtaaagtc
ctgatcaagattccgcgtaaatccgcgaaatccggcgatatcacgggtggtcttccaaga
gttacggaacttttcgaagcgcgtaacccttccaaccctgctgtagtaacagaaatcgac
ggtgtagtttcttacggtaaaatcaagcgtggtaaccgcgaattgatcgtagaggcaaaa
accggagaaatctccaagtacttggtgaaactttcaaaccagatcctggtgcaggaaaac
gacttcgtaagagcaggttcaccactttccgatgggtccatcacgccggacgacatcctg
aaaatcaaaggcccaacagccgttcaggaataccttgttaacgagatccaggaagtttac
cgacttcagggagtaaagatcgatgacaagcacttcgagattatcgttcgtcagatgatg
accaaagttgagatcgtggacggtggtgatacacagttccttgaaggtgcattagaacac
aaattcgacttccttgaggaaaacaaccgcgtattcggactgaaagtagtgactgatgca
ggtgattcgaaagaattcaagccaggtcagatgatcactgccagagaacttcgtgacgag
aattctaaactgaaacgtgaagatttagccctggtagaagtgcgcgaagcattgcctgca
acggcgacaccggttcttcaggggatcaccagagcggcgcttcagaccaaatcgttcatg
tcggcagcttccttccaggagacgaccaaagtgcttaatgaggctgcagtttccgggaaa
gtagactacctgactggtctgaaagaaaacgtaatcgtaggtcacagaatccctgcgggt
acaggtctgaaagactatcagaacatcatcgtaggttccaagaaagagttcgaggacatc
aactaa
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