Chryseobacterium sp. 6424: CO230_10910
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Entry
CO230_10910 CDS
T05704
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chrz
Chryseobacterium sp. 6424
Pathway
chrz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CO230_10910 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chrz03400
]
CO230_10910 (mfd)
Enzymes [BR:
chrz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CO230_10910 (mfd)
DNA repair and recombination proteins [BR:
chrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CO230_10910 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AYO58945
UniProt:
A0A3G2TFV2
LinkDB
All DBs
Position
complement(2329162..2332551)
Genome browser
AA seq
1129 aa
AA seq
DB search
MQLKSIRDAFLPEMLQKEFGKEIFENLRTSQRVTVKGFAGSSPSIFAAELFLTQQKSILF
LIEDKEEALYVTAELEDLLGKEQVLYFPSTHLDPYQIEKTQNANLVLRTEVLNRLNADKK
PKVIVAPFAGLSEKVLKKEDFSAISHKIKVGESLDFDFTEELLHQFNFQMTDFVSEPGEF
SVRGGIVDVFSYSNEEPYRINFFGNEIESIKTFNIETQLTNGKVDEFQLVSNMNFAVSGS
KVTLFEILPKDSFVVSKNAFLALKKITAFFEKAHQKFDTLSKDIKHQTPAELFVSEQEFI
NDLSKLKHIDFTLDALNDHVKATEIQLSQTQQPSFHKNFELLMEDLREKREAGFGLWISF
SGEKQKERLEAIFEEILSVSDEEQASKIPFKSFRSELHEGFIDAEHKISVYTDHQIFDRY
QRFKAKNTFAKSEQLTLKDLMQMKVGDYITHIDHGIGKFMGLVKVNNDGKVQECFKLVYK
NGDLLYVSIHSLHKISKYNGPDGKEIVLSKLGSPAWKTLKQKTKAKVKQIAFDLIKLYAQ
RKTAKGFAYKPDSYLQNELEASFLYEDTPDQEKATLDVKKDMENDTVMDRLICGDVGFGK
TEIAVRAAFKAATDGKQVAILVPTTILAFQHYRSFKERLKDFPVTISYLNRFRTAKQKAE
TKEGLKNGKIDIVIGTHQLVGKDIAFKDLGLLIIDEEHKFGVSVKDKLKTLKSNIDTLTL
TATPIPRTLQFSLMAARDLSVIKTPPPNRQPVETSIVGFNEEIIRDAISYELQRDGQVYF
INNRIENLKDIAGLIQRLVPDAKVITGHGQMDGKQLERNVLDFMEGKYDVLVSTTIVESG
VDVPNANTMFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPFDMMTSDARKRLEAIE
QFSDLGSGFQIAMKDLEIRGAGDLLGGEQSGFINEMGFDTYQKVMQQALEELQNEEEFEN
LFENEADRKKLFKSNKEVNIDTDLELMLPDSYVQSIEERLSLYQKLAETESKTELQAFEN
ELIDRFGKLPPEVRNLLKSVELKWLAAEIGFEKIVVKNGVFLGYFPANPQDKFYHSEKFK
KIIAYLTTNPSEATLKEKQSKEGNQLMMRKENVQHVDEVTNVLERILGK
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaatcaatccgcgatgcttttctcccggaaatgcttcagaaagaattcggg
aaagaaatctttgaaaatctacgaacctcacagcgtgttaccgtaaagggttttgccggc
tcatcaccctccatattcgccgctgaactttttcttactcaacaaaaaagcatacttttc
ctgatcgaggataaggaagaagcactttatgtgaccgccgagctagaggacctgctaggc
aaggagcaggtgttgtatttcccatcgacgcacctggacccttatcagattgaaaaaaca
cagaacgcaaatctggtgctgcgtaccgaggtgcttaaccgactgaacgcggataaaaaa
cccaaagtcatagtggcaccgtttgccgggctgtccgaaaaagttttgaaaaaggaagac
ttcagtgccatttcacataaaattaaagttggggaaagtctcgattttgattttactgaa
gaattgctgcatcagtttaactttcagatgaccgatttcgtgtcagagccgggcgagttt
tcagtgcgcggcggcatcgtcgatgtattttcctattccaatgaagagccttaccgcatc
aattttttcgggaatgaaatcgaaagtattaagaccttcaatatagaaacgcagcttacc
aacggcaaggtggatgaatttcagttggtatcgaacatgaatttcgcggtctctggcagt
aaggttaccctgtttgaaattttgcctaaagacagtttcgtcgtatcaaaaaacgctttt
ctggctttaaagaaaatcaccgctttctttgaaaaggcgcatcagaaattcgatacactc
agcaaagacatcaagcaccagacgccggctgaactttttgtttcggagcaagaatttata
aatgacctctcaaaactcaagcatatagattttacgctggatgcgttgaatgaccatgtg
aaagccacagaaatacaactcagccagacacagcaacccagtttccataaaaatttcgaa
ctgttgatggaggatttgcgtgaaaagcgcgaagccggtttcggattgtggatttctttt
tcgggtgaaaaacagaaggaacgtctggaagctatctttgaggaaattctttctgtttcc
gatgaggagcaggcttcgaagataccgttcaagtcattcaggtccgagctgcatgaaggt
ttcatcgatgcggagcataaaatctcagtgtataccgaccatcagatctttgaccgttat
caaaggtttaaggcgaagaacacttttgcaaaatccgaacaactgacgctgaaagacctg
atgcagatgaaagtgggcgactacatcacccacatcgaccacggtatcggtaaattcatg
gggttggtaaaagtaaataatgatgggaaagtgcaggaatgtttcaaactggtatataaa
aacggcgatttgctgtatgtcagcattcattccttacacaaaatctcaaaatacaacgga
cccgacggtaaagagattgtccttagcaaattaggttcgcccgcctggaagactttgaaa
cagaaaaccaaagccaaggtaaaacaaatcgcatttgatctgataaagctttatgcacaa
cgcaaaacggccaaaggtttcgcttataaacccgactcttacttgcagaatgagctggaa
gccagtttcttatatgaagacacgccagaccaggaaaaagcgacacttgatgtgaaaaaa
gacatggaaaacgataccgtgatggatcgtctgatctgtggtgacgtaggtttcggtaaa
acagaaatcgcagtacgtgccgccttcaaagccgccacagatggtaagcaagtcgctata
ttggtgccgacaaccatccttgcctttcagcattaccgaagttttaaagaaagactgaag
gatttcccggtaacgatttcatacctcaaccgtttccgtaccgcaaaacaaaaagcagag
accaaggaaggcctgaaaaacggtaagattgatatcgtaatcggtacacaccaactggta
gggaaagatatagcattcaaagatctcggtctgttgattattgatgaagagcataaattc
ggtgtttcggtaaaagacaagctcaaaaccctcaagagcaatattgatacacttacactt
actgcaacgcctattccgcgaacactgcagttttcgctgatggcggcgcgtgacctttcg
gtcatcaaaacaccaccaccaaaccgtcaacccgtggaaaccagtattgtaggctttaat
gaagaaatcatccgcgatgctatttcttacgaattacagcgcgacgggcaggtatatttc
atcaataaccgtatcgagaacctaaaggatatcgcagggcttatacagcggttagtgcct
gatgctaaggtgattacagggcacgggcagatggatggcaaacagttggaacgcaatgta
ctggattttatggaaggcaaatacgatgtactggtctcgaccaccattgtagaaagtggc
gtggatgtaccgaatgccaataccatgttcatcaatgatgcgcagcgtttcgggatggca
gacctgcaccagatgcgcggccgggtggggcgtagcaaccgtaaagcattttgctacctc
attacaccaccatttgatatgatgacctctgatgcacgcaaaaggctggaagcgatagag
cagttttcggacttgggcagtggttttcagattgcgatgaaagaccttgaaatacgtggt
gccggggatttgctgggtggcgaacaaagcggtttcatcaacgaaatgggttttgatact
taccagaaagtcatgcagcaagccttggaggaattacagaacgaagaggaatttgaaaat
ctttttgaaaatgaagccgaccgtaaaaaactctttaaatcaaacaaagaagtcaatatt
gatacggatttggaactgatgctgcccgactcctatgtgcagagtatagaagagcgccta
tcactataccaaaaactggctgaaactgaaagtaaaaccgaactgcaagcctttgaaaat
gaacttatagaccgctttggcaagttgcctccggaagtaagaaatttattgaaatccgta
gagttgaagtggctggcggccgaaattggtttcgagaaaattgtggtgaaaaacggcgtt
ttcctaggctatttccctgcaaatccacaagataagttctatcatagcgaaaaatttaaa
aaaatcattgcttatttaaccaccaatccctccgaagccactttaaaggagaaacaatcc
aaagagggcaatcaactgatgatgcgcaaagaaaatgtgcagcacgtagatgaggtaacc
aatgtgttggagcggattttagggaaataa
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