Chryseobacterium sp. 6424: CO230_11050
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Entry
CO230_11050 CDS
T05704
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
chrz
Chryseobacterium sp. 6424
Pathway
chrz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chrz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CO230_11050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chrz03021
]
CO230_11050
03019 Messenger RNA biogenesis [BR:
chrz03019
]
CO230_11050
Transcription machinery [BR:
chrz03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CO230_11050
Messenger RNA biogenesis [BR:
chrz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CO230_11050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
Mor
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AYO58602
LinkDB
All DBs
Position
complement(2361733..2363568)
Genome browser
AA seq
611 aa
AA seq
DB search
MFNLETLRSKSEAELARIITDLGVKVAKNSTDSDKIFAILDFQASNTKIAKDYFNTTEDT
GNTEPTETPAKKTRKTSTRKKSVKTEELPTEPSAEVTANPTENLPESPVEIVAEELATDK
AENPAEQTPKAPAKKKRQRTPKTETPAAEAAENETITTPAEAEPNTEQPKKAQTNQNQNN
GNGHTNNNGNGNNNQNNGQGNGNNKPQHPNQKNQNRQHQNQNRNQQNAESTEEVPKKDFN
FDGMVTIEGVLEILPDNYGFLRSPDFSYISSPDDVYVSTNQIRNYGLKTGDTVKGIVRLP
KEGEKYFSLLKPTEVNGRELEFIKDRVAFEFLTPLFPEEKFNLTGQNSTRSTRIVDLFTP
IGKGQRAMIVAQPKTGKTMLLKDIANSISANHPEAYMMILLIDERPEEVTDMERSVNAEV
IASTFDEPAEKHVKVANLVLSKAQRMVECGHDVVILLDSITRLARAYNTVTPASGKILSG
GVDANALHKPKRFFGAARNIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDR
KIANKRIYPAIDLVASSTRRDDLLHDEITQQRMWILRKYLADMNPVEAMEFVNKTIKGTM
SNEEFLMSMNR
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatcttgagacattacgctcgaaatccgaagcggaattggccagaatcatcacg
gatctaggggtgaaagtagccaaaaacagcacggacagcgataagatttttgccatactc
gattttcaggcttctaataccaaaattgccaaagattatttcaatacaaccgaagacacc
ggcaatacagaacctactgaaactcccgcaaaaaaaacacgcaaaaccagtacccgtaaa
aaatcagtgaagactgaagaactaccaactgaaccatctgcggaggttaccgcaaatccc
acagaaaacctacccgagtctcctgtagaaatcgtagctgaagaattggctacagacaaa
gcagaaaatcctgctgagcaaacgcccaaggcacccgcaaagaaaaaaagacagcgaaca
ccgaaaacggaaactcccgctgctgaagctgcagaaaacgaaaccatcaccacgccggcc
gaagcagaacctaataccgagcaacctaagaaagcacaaaccaaccaaaaccagaacaac
ggtaacgggcacacaaataataacggtaacggcaataataaccaaaataacggccaaggc
aacggtaacaataagccacagcacccgaaccagaaaaaccagaaccgtcaacaccagaac
cagaaccgcaatcaacaaaatgccgaaagtacagaggaagttcctaaaaaagacttcaat
ttcgacggtatggtaaccattgaaggcgtgctggaaatccttcccgataactacggtttc
cttcgatctccggatttttcatacatatcttctcccgatgatgtatatgtatcgaccaac
cagatcaggaattacggcctgaaaaccggcgatacggtaaaaggcatcgtgcgcttgcca
aaagaaggcgagaaatatttttcactgctgaagcctacggaagtcaacggccgtgaacta
gagtttattaaagaccgtgtcgcgtttgagtttctgacaccgctgtttcctgaagaaaaa
ttcaatcttaccgggcaaaactccacacgctctaccaggattgtagacctttttacccca
atcgggaaagggcagcgtgccatgatcgtggcacaacctaaaaccggtaagaccatgttg
ctgaaggacatcgcgaactcaatatccgcgaaccatcctgaagcgtacatgatgatattg
cttattgatgaacgcccggaggaagtaacggatatggagcgcagtgtgaatgcggaagtg
attgcttccacctttgatgaacctgcggaaaaacacgtgaaagtcgccaatctcgttctt
tcaaaagcacagagaatggtggaatgtggacatgatgtagtgattctgctcgattccatc
acacgccttgccagagcgtataacacggttaccccagcttcagggaaaattctttccggt
ggggtagatgccaatgcgctgcataaacccaaaaggtttttcggggcagcccgtaatatc
gagggtggcggttcccttaccattatcgccactgcactgattgataccggctctaagatg
gacgaggtcatctttgaagagtttaaaggtaccggaaatatggagttgcagctcgaccgt
aagattgccaacaaaagaatttacccagccattgatctggtggcatcaagcacacgacgc
gatgatctgctgcatgatgaaattacccagcagcgcatgtggatccttcggaagtatctt
gcggacatgaaccctgtggaagcaatggaatttgtgaacaaaaccatcaaaggaaccatg
agtaatgaagagttcctgatgagtatgaaccgataa
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