Cytophaga hutchinsonii: CHU_0094
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Entry
CHU_0094 CDS
T00385
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
chu
Cytophaga hutchinsonii
Pathway
chu03030
DNA replication
chu03430
Mismatch repair
chu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CHU_0094 (dnaE)
03430 Mismatch repair
CHU_0094 (dnaE)
03440 Homologous recombination
CHU_0094 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chu03032
]
CHU_0094 (dnaE)
03400 DNA repair and recombination proteins [BR:
chu03400
]
CHU_0094 (dnaE)
Enzymes [BR:
chu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CHU_0094 (dnaE)
DNA replication proteins [BR:
chu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CHU_0094 (dnaE)
DNA repair and recombination proteins [BR:
chu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CHU_0094 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
MCM10_OB
HHH_3
T2SSK
Peptidase_M43
DUF7566
Motif
Other DBs
NCBI-ProteinID:
ABG57388
UniProt:
A0A6N4SMA3
LinkDB
All DBs
Position
complement(110266..113850)
Genome browser
AA seq
1194 aa
AA seq
DB search
MPDFAHLHVHSQFSLLDGAASIKGLVGKAVKNEMKALALTDHGNMHGIFQFVAEAVKNNI
KPIVGCEFYLVEDRFKKNFTKDNKDVRYHQLLLAKNPEGYKNLIKLCSLGYIEGQYGKYP
RIDKELILQYHKGLIATTCCLGAEVPRTILAKGEEAGEKAFKWWLDLFGEDYYVELQRHD
IKEQNIVNEVLIKLARKYQVPIIASNDSHYVDQKDSNAHDILLCINTGEKQSTPTMKDFS
DDESMMKGRRFAFANDQFYFKTKEEMSTLFSDIPEAIDNTMQIVDKVEILKLKQDILLPN
YEIPSTFLDQDNYLQHLTYEGARNRYVDVTPEIKERLDFELHTIRTMGFAGYFLIVQDFI
NKGREIGVLIGPGRGSAAGSAVAYCIGITNIDPIKYNLLFERFLNPDRKSMPDIDTDFDD
EGRQKVIDYVVEKYGKKQVAQIVTYGTMAAKMSIKDVARVLDLPLQESNALAKLVPDKPG
IELNWVMKGPMKASDKKNEKDKTLTEELTPEDIENVKKLREMLDDEGTLASDVLKEALIL
EGSVRGTGIHAAGIIIAPKDLYDIIPVFTAKDSELLVTQFDGKVIEDAGVIKMDFLGLKT
LTIIRDALKMIEENHGIKIDIDYIPLDDAKTFELYQKGETNATFQFESAGMQKHLINLKP
DKFEDLIAMNALYRPGPIEYIPKFIQRKLGKEEIVYDLPEMEEYLGDTYGITVYQEQVML
LSQKLAGFTKGDADVLRKAMGKKDRATLDKMKGKFIEGAVAKGLDPKVCEKVWTDWEAFA
QYAFNKSHSTCYAFVAYQTGYLKANYPSEYMASVLTHNLSNFDKISFFMEECQRMGMAVL
GPDVNESSYQFSVNSNGQIRFGMGAIKGVGEGPVQAIVDERKANGPFKDFFDFVSRVNLR
AVSKKTFESLALAGALDYFTELHRAQYFNVAERETITFLEKAIRYGNAFQTEDDSNQSSL
FGDSSSAKPAPPKITPCEEWGNIEKLKKEKEIVGFYISGHPLDQFKLEIDNFCNCPLENV
MSSPQGKDLTVAGIVTKVNVRQSKNGKPFVLFTIEDYSGSLDLALFGEDYLKHAHFINIG
EFLFMKGSLKPKWGREGELDFKITTTQLLADVRAKLCKSVNISVNLDQINAITVVEIDRI
VSEHKGSCLLYLTLTKNTNEHTVKTFSRSYRVDPNNVFLSELNKLEGISYKIGA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatttcgcacatttacatgtccattcacagttttctttattagatggtgctgcc
agcataaaaggtctggttggcaaagcggttaaaaatgaaatgaaagctcttgcgcttaca
gatcatggaaacatgcatggcatttttcaatttgttgccgaagcggttaaaaataacatc
aagccaattgttggttgtgaattctatcttgttgaggatcgttttaagaagaactttacg
aaagacaataaagatgtccgttatcaccagttactattagcaaaaaacccggaaggatat
aaaaatctgatcaagctttgttctctaggctacatcgaaggtcagtatggaaagtacccg
cgtattgataaagaacttatactgcagtatcacaaaggtttgattgcgactacgtgttgc
ctgggagctgaagtgccgagaacaattctggctaaaggtgaagaggctggtgaaaaggct
ttcaaatggtggctggatttatttggtgaagactattatgtagagctgcagcgccacgat
atcaaagaacagaatattgtaaacgaagtgctgatcaagcttgcacgtaagtatcaggta
ccaattattgcttcgaacgattcgcattatgtggatcagaaagattcgaacgcgcacgac
attcttttatgtatcaataccggtgaaaagcaaagcaccccgaccatgaaagatttttcg
gatgatgaatcgatgatgaagggtcgtcgctttgcatttgcgaacgatcagttttatttc
aaaacgaaagaggaaatgtcaacgctattcagcgacattcccgaagcgatcgacaatacg
atgcagattgttgacaaagtagaaatactgaagctgaagcaagacatccttttgcctaat
tatgaaatcccttcaacatttttagaccaggataattatttacagcatttaacatacgaa
ggtgcccgcaaccgatacgttgatgtaacaccagaaattaaagagcgactggattttgaa
ttacataccatccgcacgatgggctttgccggctactttctgatcgtgcaggatttcatt
aacaaaggccgcgagatcggtgtgttaatcgggcctggccgtggttcagctgccggctct
gctgttgcatattgtattggtatcaccaacattgaccctattaaatataatctcctgttt
gagcgtttcctgaatccggatcgtaagagcatgcccgatattgatacagactttgacgac
gaaggccgtcagaaagtgattgattatgtggtagagaaatatggcaaaaaacaagtagcg
cagattgtaacctatggtacaatggcagcgaagatgagtattaaggatgtggcgcgtgta
ctggatcttccgttacaggaatcaaatgcgctggccaaacttgtacccgacaaaccaggc
attgaattgaactgggtaatgaaaggcccgatgaaggcgtcggataaaaagaacgaaaaa
gacaaaacgcttacagaagaactaacgccggaagatatagagaatgtaaagaagcttcgt
gaaatgctggatgacgaaggcacacttgcttctgacgtattgaaggaggcattgatattg
gaaggctctgtacgcggcacgggtattcacgcggcaggtatcatcattgcgccaaaagac
ctgtatgatattatccccgtattcaccgcaaaggattcggagttgttggttacacagttt
gacggcaaagtaattgaagatgcaggtgtaatcaagatggactttttgggtttgaaaacc
cttaccatcattcgtgatgcgttaaaaatgattgaagaaaaccacggtataaaaatcgat
atcgattatattccgctggatgatgcgaagacatttgaattgtaccagaaaggtgaaaca
aacgcgacgttccagtttgaatcggcggggatgcaaaaacacctcatcaatttaaaaccg
gataagtttgaggatttgattgcgatgaacgccctatacagaccgggcccgatcgaatac
attcctaaattcattcagcgtaaactgggcaaagaagagattgtgtacgacttgccggaa
atggaagaataccttggtgatacgtatggcattaccgtttaccaggaacaggtaatgctt
ttgtctcagaagctggctggctttacaaaaggggatgccgatgtactgcgtaaggcaatg
ggtaaaaaagaccgtgccacgctggataaaatgaaaggcaaatttattgaaggtgcggta
gcaaaaggacttgatccgaaagtatgtgaaaaagtatggaccgactgggaagcctttgct
caatacgcgtttaacaaatcgcactctacctgttatgcgtttgtagcgtatcagacgggt
tatttaaaagcaaattatccttctgaatatatggcgtctgtgttgacgcataacttaagc
aactttgataagatctctttctttatggaagagtgccagcgtatgggcatggcggttctt
gggccggatgtaaatgaaagtagttaccagttttctgttaacagcaacgggcagatccgt
ttcgggatgggcgccattaaaggtgtgggagaaggcccggtgcaggcgattgttgatgaa
cgcaaggcaaacggaccattcaaggatttctttgattttgtttccagagttaatctccgt
gcggtaagtaaaaaaacatttgaatcgcttgcccttgccggcgcactggattatttcacc
gaactgcaccgtgcacagtatttcaatgtagcggaacgtgaaaccatcacattccttgaa
aaagcgatccgttacggaaatgcttttcagacggaagatgacagcaatcaatcgtcgctg
tttggcgatagttcaagtgcgaaacctgcgccgcctaaaatcacgccttgcgaggaatgg
ggaaatattgaaaaactgaaaaaagaaaaagagattgttggtttctatatttccggtcat
ccgctggatcagttcaaactggagatcgacaatttctgtaattgtccgttggagaatgtc
atgagcagtccgcagggtaaagaccttactgtagcgggtattgttacgaaagtaaatgta
cgccagagcaaaaacggaaaaccatttgtactctttacaattgaagattacagcggctcg
cttgatctggctttatttggcgaagattatctgaaacacgcgcattttatcaatattggc
gaattcctgtttatgaaaggcagtttgaagcctaaatggggccgtgaaggggaattagac
tttaaaatcaccactacgcagctattggcagatgtacgtgctaaattatgtaaaagcgtt
aatataagtgttaatctggaccagatcaatgctattaccgttgttgaaattgacaggatc
gtttcggagcataaaggcagctgtttgctctatttaacactgactaaaaatacaaacgag
catacagtaaaaacattctcacgtagttacagagttgacccgaataacgtatttcttagc
gagttgaacaaactggaaggcatctcgtacaaaataggtgcctaa
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