Cytophaga hutchinsonii: CHU_1554
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Entry
CHU_1554 CDS
T00385
Symbol
uvrD
Name
(GenBank) ATP-dependent DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
chu
Cytophaga hutchinsonii
Pathway
chu03420
Nucleotide excision repair
chu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHU_1554 (uvrD)
03430 Mismatch repair
CHU_1554 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chu03400
]
CHU_1554 (uvrD)
Enzymes [BR:
chu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CHU_1554 (uvrD)
DNA repair and recombination proteins [BR:
chu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHU_1554 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
CHU_1554 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
ResIII
RRM_PARP14_3
DEAD
AAA_11
Ku_C
Motif
Other DBs
NCBI-ProteinID:
ABG58825
UniProt:
A0A6N4SR16
LinkDB
All DBs
Position
complement(1809784..1812033)
Genome browser
AA seq
749 aa
AA seq
DB search
MSYLDSLNDVQRQAVEQTDGPVMIIAGAGSGKTRVLTYRIAHLIQKGVEPFNILSLTFTN
KAAKEMQHRIQAVCGSEARNVMMGTFHSVFSRILRVESQKIGFPSNFTIYDTEDSKSLLR
TILKEQNLDDKVYKPNTVFNRISAAKNRLISYKEYIANPNYMADDRAALRPEMGKLYQMY
QERLIRAGAMDFDDLLFYTYKLFNEHPDVLNKYQHKFKYIMVDEFQDTNIAQYNITKKLA
AMNRNICVVGDDAQSIYAFRGADIQNILNFEKDYPELKVLKLEQNYRSTKTIVEAANNVI
TKNKAQLKKDVWTSNESGEKIHVYRAASDNEEGRIIAQTIFENKMNMQLRNKDFAILYRT
NSQSRSFEEALRKLNINYKVVGGMSFYQRKEIKDVLAYLRFVLNDQDEQSFRRIVNFPKR
GIGDTTIAKLFVIADEQGTTVWDILCNVKSIMTGRLVPVIEGFVDLIKSYKILANTKDAF
EAANEIAKQSGLLKELYEDKTVEGIARYENVQELLNGIKEFVDRPDQEDKSLGSYLQEIS
LLTDTEKDKEDKDSVTLMTIHSAKGLEFNQVFVVGIEEDLFPSAMMLNSRADLEEERRLF
YVAITRAEKRLTLSFATSRYRFGQLKSCSPSRFLEEIDPRHLQMTSITANSIGSQESGPA
FSGIKPKTAAATVQVKAKVAPAYTPSEDFKPSDTSNLMIGMKVEHPKFGYGEVKNIQSNG
TDRKAVIDFKNLGEKTLILSFAKLRIHES
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgagttatctagattcattaaatgatgttcagcgacaagcggttgaacaaacagatggc
cctgtaatgattatagccggtgccggctcaggaaagacccgtgtacttacctaccgtatt
gcccatttaatacaaaaaggtgtagaaccgtttaatatattatccctcacatttaccaat
aaagctgccaaagaaatgcagcaccggattcaggctgtatgcggcagtgaagcacgaaat
gtaatgatgggaacgtttcactctgtattttcgcgtatcctgcgagttgaatctcagaaa
attggatttccaagcaactttacgatctatgataccgaagattctaaatcgttgctgaga
acgatattaaaggaacagaatttagacgacaaagtttacaagccgaatactgtttttaac
cgcatcagtgcggcaaaaaacaggctcatttcatataaagagtatattgccaatccaaat
tatatggcagatgaccgggcagcattacgtcctgaaatgggtaaattgtaccagatgtat
caggaacgcctgatccgcgccggtgcgatggattttgacgatttacttttctatacctat
aaacttttcaatgaacatccggacgtgctgaataaataccagcataaattcaaatacatc
atggtagatgagtttcaggatacaaacattgcacagtataacataaccaaaaagctggcg
gcgatgaaccgcaacatctgcgtggtgggtgatgatgcacaaagtatctatgccttccgt
ggtgcggatattcagaacatcttaaattttgaaaaagattatccggaattaaaagtttta
aaactggaacagaattaccgttcaacaaaaacaattgttgaagcggcaaataatgttatt
acaaaaaataaagcgcagttaaaaaaggacgtatggacttcaaacgaatccggagaaaaa
atccatgtataccgtgctgccagtgataatgaagaaggccggatcattgcgcagacaatc
tttgaaaacaaaatgaacatgcaattgcgaaacaaggattttgcaatcctgtaccgtacc
aactcgcaatccagaagttttgaagaagcgcttcgtaagctcaacataaactacaaagta
gttggcggtatgtctttctatcaacgaaaagaaattaaagatgtacttgcttatctgcgt
tttgtattaaatgatcaggatgaacagagtttcagacgtatcgttaattttcctaaacgc
ggtattggcgatacaaccatagcaaaactatttgtaattgcagatgaacaggggacaacg
gtttgggacattctttgcaatgttaaaagtattatgaccggccgtctggtaccggtaata
gaaggttttgtagatctgatcaaatcctataaaatacttgccaatacaaaagatgcgttt
gaagcagccaatgaaatagcaaaacaatcagggcttctgaaagaattatatgaagacaaa
acggttgaaggtattgcacggtatgaaaacgtgcaggagcttttaaatggtattaaagaa
tttgtggatcgtcccgatcaggaagacaaatcattaggaagctacctacaggaaatatcc
ttattgacagataccgaaaaagacaaagaagataaagattctgtaacgctcatgacgata
cactctgcaaaaggacttgagttcaatcaggtatttgtagtgggtattgaagaagatctg
tttccatcagcaatgatgctgaacagccgtgcagacctggaagaagaaagacgtttgttt
tatgtagcgatcacacgtgcagagaaacgattaaccttaagctttgcaacttcccgttac
cgttttggacaattgaaaagctgttcgccaagcagatttttagaagaaattgatccgcgc
catttgcaaatgacatctattacggccaactccatcggctcgcaggaatcaggtccggca
ttcagcggaattaagcccaaaactgctgctgccaccgttcaggttaaagcaaaagttgca
ccggcatatacgccatctgaagattttaaaccaagcgatacatccaatttaatgatcgga
atgaaggtagaacaccccaaattcggttatggagaggttaaaaatatacaatcgaacggt
acagatcgtaaagcagtgatagattttaaaaatttaggagaaaaaacactaattcttagc
ttcgcgaaactgagaattcacgaatcttag
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