Cytophaga hutchinsonii: CHU_1598
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Entry
CHU_1598 CDS
T00385
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase (cold-shock DEAD-box protein A)
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chu
Cytophaga hutchinsonii
Pathway
chu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHU_1598 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chu03019
]
CHU_1598 (deaD)
03009 Ribosome biogenesis [BR:
chu03009
]
CHU_1598 (deaD)
Enzymes [BR:
chu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHU_1598 (deaD)
Messenger RNA biogenesis [BR:
chu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHU_1598 (deaD)
Ribosome biogenesis [BR:
chu03009
]
Prokaryotic type
rRNA helicases
CHU_1598 (deaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Thioredoxin_17
Motif
Other DBs
NCBI-ProteinID:
ABG58868
UniProt:
A0A6N4SR79
LinkDB
All DBs
Position
complement(1872033..1873775)
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AA seq
580 aa
AA seq
DB search
MLFKDLGLSPEVVEAIESIGYSEATPIQEKTIPILMTGKDLTGQAQTGTGKTAAFGIPAI
EHVDISINQTQSLILCPTRELALQVCTELKKLSKFKKGLRVLAVYGGESIERQIRDLKAG
AHIVVGTPGRIIDHLDRRTLNASHLSQIILDEADEMLNMGFREDIELILTRLPEERQTVL
FSATLAPPILALAKRFQNNPEIIKIERKELTISTVEQFYYLVKNSQKTEIVTQIIDLNNL
QLMLIFCNTKRKVEEVTDELKAYGHNPISLHGDKTQRDRTEVMSKFRKGLANILVATDVA
ARGIDVTGVDAVINYDVPLDIENYVHRIGRTGRAGQLGKSFTLVTSDEKYKLRDIERYTK
ATIEKAETPTRQELVAYKKDKLATRITTELEKPNIKIWSDLLEEYKEKGITADQIAIALL
SKEMKDLAEPERRVFEDRGDRRDRGDRGDRGGRFDRGDRRDGPRRDGRSSDRFGDRPAAS
RDRDGGERRERTPRPRTSDASMARLFVNVGRIDRISPGDIVGAFAGEANIKGSQIGQIDI
FDKYSFVELPHDLVDQVMDGMRNNKIKGKSINIEISNGKQ
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgttatttaaagaccttggattgtctcctgaagttgtggaggctatcgaatctattggc
tattctgaagccacgcctattcaggaaaaaacaattccaattttaatgacaggaaaagac
cttacaggtcaggcacaaacgggtactggtaaaacagctgcctttggtattcctgctatt
gaacatgttgatatttctatcaaccaaacacaatccttaattctttgtcctacacgtgaa
cttgctttacaggtatgtacggaattaaaaaaactttctaaattcaaaaaaggtcttcgt
gtacttgcagtatacggtggcgaatcgattgaaagacaaatccgcgatctgaaagcgggt
gcgcatatcgttgtaggtacacctggccgtatcattgatcacctggacagacgtacattg
aatgcttctcacctttctcagatcatcttagatgaagcggatgaaatgctgaacatgggt
ttcagagaagacatcgaattaatcttaacccgtttaccagaagaacgtcagactgtatta
ttttctgcaacgcttgctcctcctatcctggcgcttgctaaacgtttccagaataatccg
gagatcattaaaattgaaagaaaagaattaacgatcagcacggttgaacaattctattac
ttagttaaaaactctcaaaaaacagaaattgttacacaaatcattgacctgaacaatctt
cagttgatgttgatcttctgtaatacaaaaagaaaagttgaagaagttaccgatgaatta
aaagcatacggacacaatccgatcagcttacacggtgataaaacacaacgcgacagaaca
gaagtaatgagcaaattccgtaagggattagccaatatccttgttgctacagatgttgcg
gcacgtggtattgacgttacaggtgttgatgcggttatcaactacgatgttccattggat
attgaaaactacgttcaccgtatcggcagaacaggtagagcaggtcagttaggtaaatca
ttcacattggtaacaagtgatgagaaatataaattgagagacatcgaacgttatacaaag
gcaacaattgaaaaagctgaaacgcctacacgtcaggaattagttgcttataaaaaagat
aaattagctacacgtattactactgaattagaaaaaccaaacattaaaatctggtctgat
ttattagaagaatataaagaaaaaggtattactgctgatcagattgcaattgcgttgctt
tctaaagaaatgaaagatcttgcagaacctgaacgcagagtatttgaagaccgtggcgat
cgtcgtgatcgcggcgacagaggtgaccgtggcggtcgtttcgatcgtggtgacagaaga
gatggacctcgcagagatggccgttcttcagaccgtttcggagacagaccagctgcttca
agagaccgtgatggtggtgaaagacgtgaaagaacgccgagaccaagaacaagtgatgca
agtatggcacgtttattcgtaaacgttggacgtattgaccgcatctctcctggtgatatc
gttggtgcatttgccggtgaggcaaacatcaaaggttctcagatcggacagatcgatatc
ttcgataaatattcattcgtggaacttccacatgacttagttgatcaggttatggacgga
atgagaaacaataaaattaaaggaaaatcaatcaacatcgaaatttcgaacggtaagcaa
taa
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