Cytophaga hutchinsonii: CHU_1786
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Entry
CHU_1786 CDS
T00385
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
chu
Cytophaga hutchinsonii
Pathway
chu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHU_1786 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chu03019
]
CHU_1786 (pnp)
03016 Transfer RNA biogenesis [BR:
chu03016
]
CHU_1786 (pnp)
Enzymes [BR:
chu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CHU_1786 (pnp)
Messenger RNA biogenesis [BR:
chu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CHU_1786 (pnp)
Transfer RNA biogenesis [BR:
chu03016
]
Prokaryotic type
tRNA degradation factors
CHU_1786 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
S1_RRP5
KH-I_KHDC4-BBP
RNase_II_C_S1
S1CSD-TOTE-1
KH_2
Motif
Other DBs
NCBI-ProteinID:
ABG59053
UniProt:
Q11U61
LinkDB
All DBs
Position
complement(2093981..2096134)
Genome browser
AA seq
717 aa
AA seq
DB search
MSYPGLTIINKTITLPDGREIQIETGKLAKQADGSAVVKLGNAMILATVVSAKEAKPGVD
FMPLSVDYQEKFASNGKIPGGFLKRESRLSDYEILISRLVDRAMRPLFPEDFHADTQVAI
TLISADADVLPDALACLAAQAAMSVSDIPFNGPVSEVRVISLNGEFIINPKPAQIEKAEL
ELIVAASYDNVIMVEGEMSEVSEELMLNAIKVAHDAIRTQCIVLKELESAAGKTEKRTYS
HEVNDWDLKKKINDAVYQQVYEVAKLGNANKNTRAEGFKAVKKAYIESLPADHTEDLTLI
GKYYHDVEKDAVRNLILDERKRLDGRSLEQIRPIWSEVGYLPSAHGSAIFTRGETQSLTT
VTFGTRLDEQMIDSAMFSGNNKLMLHYNFPGFSTGEVKPNRGPGRREVGHGNLAYRAIKK
VMPPEIENPYTIRIVSDILESNGSSSMATVCAGTLALMDAGIKIKAPVSGIAMGLITDTK
TGRWAVLSDILGDEDHLGDMDFKVTGTEKGITACQMDIKVDGLSYDILSQALQQANRGRL
HILSEMKKTLATPREDLKPHAPRMIMIQIPKELIGAVIGPGGKIIQEIQKTSGATVNIEE
KDNAGWVSIFSKDKTALDSALSQIKGIVTLPEVGEVYEGKVKSITAFGAFVEFLPGKDGL
LHISEIKWERLDTMEGVLEVGETVKVKLVEVDKKTGKYRLSRKVLIPKPEQQATSNS
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgtcttaccctggattaacaatcataaataaaaccataaccttacctgacggtagagaa
attcaaattgaaacgggcaagcttgcaaaacaggcagacggttcagcagttgttaaatta
ggaaacgcaatgattttagcaacggttgtttctgctaaagaagctaaaccaggtgttgac
ttcatgcctttgtctgtagattaccaagagaaatttgcttctaacggaaaaatccccggt
ggttttttgaaaagagaaagcagattatccgattatgaaatattgatttcccgcttagtg
gatcgcgctatgagacctttattcccggaggattttcatgcagatacacaggttgctata
acattgatctctgctgatgcagatgttttgccggatgcattggcatgccttgctgcacaa
gcagccatgtctgtttcggatattccattcaatggtccggtttctgaagttcgtgtaatt
tcattaaacggagaattcattatcaacccgaagcctgctcagatagaaaaggctgaattg
gaacttatcgttgcggcttcttatgataacgttatcatggtagaaggtgaaatgagcgaa
gtatctgaagagctaatgctgaatgctattaaggtagcacacgatgcaatccgtactcag
tgtatcgtattaaaagaactggaatctgctgcaggtaaaactgaaaaacgtacttatagt
catgaagttaatgactgggatttaaagaaaaaaattaatgatgctgtatatcagcaagtg
tatgaggttgctaagttaggcaatgcaaataaaaatacacgtgctgaaggatttaaagca
gttaaaaaagcttatatcgaatcacttccggcagatcatacagaagatttaaccttaatt
ggtaaatactaccacgatgttgaaaaagatgctgtcagaaatcttattttagatgaacgt
aagcgtttagatggaagaagcttagagcagatccgtccgatctggtctgaagttggttat
ttaccatctgcacacggttctgcaatctttacacgtggtgaaacacaatcattaactact
gttacattcggtaccagactggatgaacaaatgattgacagcgctatgttctcaggtaac
aacaaattgatgttgcactataacttcccgggtttctcaaccggtgaagtgaaaccaaac
agaggtccaggccgtcgtgaggtaggacatggtaaccttgcttaccgtgccattaaaaaa
gtaatgccgccggaaattgaaaatccatatacgatccgtatcgtttctgatattcttgaa
tcaaatggttcgtcttctatggcaactgtttgtgcaggtacattagcattaatggatgcg
ggtattaaaatcaaagcacctgtttcaggtattgcaatgggtttaattaccgacactaaa
acaggtcgttgggcagtattatctgatatcttaggcgatgaagatcacttgggtgacatg
gattttaaagttacaggtactgaaaaaggtattacggcttgccagatggatatcaaagta
gatggtttatcatacgatattttatctcaagcattacagcaggcaaatagaggcagattg
cacatcctcagcgagatgaagaagacactcgctacacctcgtgaagatttaaaaccacat
gcgccacgtatgatcatgattcagattccaaaagaactgatcggtgcggtaatcgggcca
ggcggtaaaattattcaggaaattcagaagacttccggagctacagttaacatagaagaa
aaagacaacgcgggttgggttagtatcttctctaaagacaagacagctttggacagcgct
ttatcacaaataaaaggaattgtaacattacctgaagtaggtgaagtatacgaaggcaaa
gtgaaatcaatcacagcatttggtgcattcgttgagttcttgccaggaaaagacggtttg
ttacacatctctgaaattaagtgggagcgtttggatacaatggaaggtgttttagaagtt
ggtgaaacggttaaagtaaaattggttgaagtagacaaaaaaacaggtaagtatcgttta
tcccggaaggtattgataccaaaacctgagcagcaggctacatccaattcataa
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