Cytophaga hutchinsonii: CHU_1885
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Entry
CHU_1885 CDS
T00385
Symbol
rhlE
Name
(GenBank) possible ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chu
Cytophaga hutchinsonii
Pathway
chu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHU_1885 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chu03019
]
CHU_1885 (rhlE)
Enzymes [BR:
chu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHU_1885 (rhlE)
Messenger RNA biogenesis [BR:
chu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHU_1885 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
P-loop_SecA
Cas3-like_C_2
ERCC3_RAD25_C
AAA_22
UTP25_NTPase-like
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
ABG59151
UniProt:
A0A6N4SRY1
LinkDB
All DBs
Position
complement(2202774..2203940)
Genome browser
AA seq
388 aa
AA seq
DB search
MCTHLSLHMSFATLGLSPAILKALEKQFYNAPYPIQEQAIPAILKGKDILGIAQTGSGKT
ASFVLPILQMLQTKPLGKNRHINALVLVPTRELAVQVGQVFQAFSNALPNKIKSLAVYGG
VSINPQMIQLQGVEILIATPGRLLDLVDSKAVYLSDVEVLVLDEADKMLNLGFKEEMANI
FKLLPQKRQNLLFSATLGKDVDTITEFLLHDPVKIEIIAEEQNIDLIQQIAYAVEDARKG
PLLRYLIKEQKMNQVLIFTSSVHRADAVVEKLKANNILAAALHSKKSQGARTEALKQFKA
GNIHVLVATDLMSRGIDIPFLPFVINYELPRSPKDYIHRIGRTGRAEASGVAINLISEEE
THHFSVIQKKMGKKVHLTDSSGMDLHGF
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
ttgtgcacacatctttctttgcatatgtctttcgcaacattaggtttatctcccgcaatt
ttaaaagcattagaaaaacaattttataatgcgccgtatcccattcaggagcaagcgatc
cccgctattttaaaaggtaaggatatcttaggcattgcgcagacagggtcgggaaaaacc
gcgagttttgtgttgcccatcttacagatgctgcaaacaaaacctctgggaaaaaacaga
cacatcaatgcactggtgcttgtgccgacaagagaacttgccgttcaggtaggacaggta
tttcaggctttcagcaatgcacttccaaataaaataaaatcattagctgtgtatggcggt
gtttcgatcaatccgcaaatgattcaattacaaggagtggaaatattgattgctaccccc
ggccgtttgctggatctggttgattcaaaggccgtgtatttaagtgatgtggaagtgctc
gtgctggatgaagcagataagatgttgaacctgggttttaaagaagagatggcaaatatc
tttaagctgcttccccaaaagagacagaatttgttgttctctgcaactctcggtaaagat
gtagataccattactgaatttttattgcatgatccggttaaaattgaaattattgccgaa
gaacaaaacattgatctgattcagcagatagcctacgcggtagaagatgcacgcaaaggt
cctttgctgcggtatctgataaaggaacaaaaaatgaatcaggttttgatttttacatct
tccgtacaccgtgccgatgcggtagttgaaaaattaaaagcgaataatatattggcggca
gctttacatagcaagaaaagccagggggcacgcaccgaagcattaaaacagtttaaggca
ggcaatattcatgtgctggttgcaaccgatctgatgtctcgtggcattgatattcctttt
ttgccttttgtaattaattatgaattgccgcgatctcctaaagactacatccatagaatc
gggaggacgggtagagcagaagcatccggagtcgcaatcaatttaatcagtgaagaagaa
acacatcattttagcgtcattcagaaaaaaatgggtaaaaaagtacatctgacagattct
tcaggcatggatttacatggtttttaa
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