Cytophaga hutchinsonii: CHU_2570
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Entry
CHU_2570 CDS
T00385
Symbol
rhlE
Name
(GenBank) possible ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chu
Cytophaga hutchinsonii
Pathway
chu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHU_2570 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chu03019
]
CHU_2570 (rhlE)
Enzymes [BR:
chu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHU_2570 (rhlE)
Messenger RNA biogenesis [BR:
chu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHU_2570 (rhlE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_19
AAA_22
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ABG59823
UniProt:
A0A6N4STW5
LinkDB
All DBs
Position
2947913..2949253
Genome browser
AA seq
446 aa
AA seq
DB search
MLFQDLKLIDPILKALSEEGYTTPTPIQSQAIPYVLQGKDLLGCAQTGTGKTAAFSIPIL
QLLSVKKSTDRKRPIRSLIVTPTRELAIQIGESLQAYGKYTGLTSTVIFGGVNQSRQVTA
LQNGIDVLVATPGRLLDLMNQGFISLRHIEIFVLDEADRMLDMGFVHDVRRLLLALPAKR
QSLFFSATMPPEIVKLADNILVNPSKVEVTPVSSTADTIKQFMYFVDRGNKNNLLVEVLQ
DPKIKTCLVFTRTKHVADKVVKMLAEHKIKAEAIHGNKSQNARQNALTNFKAQTTRILVA
TDIAARGIDVDNLEFVINYEIPNIPETYVHRIGRTGRAGAKGTAFSFCDAEEKAYLKDIE
KLISKKIPVIDEHPYPLMDHNPPKTPQGRQQRPASSSRPKAASGANSGSSRAGNAGGSQR
SSGSSSRSGSSTGKKKWYGKSGSNTK
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgttatttcaagatttaaaactgatagaccccattttgaaagcactttcagaagaaggc
tacacaactcccactcctattcagtctcaggctattccgtatgtattgcaaggcaaagac
ttattaggctgtgcacaaacaggaacaggcaaaacagctgctttttcaattcctatttta
caattattaagtgtaaagaaaagtacggatcgtaaaagacccatccgaagccttattgtt
acaccaacgcgtgaacttgctatacaaatcggcgaaagcttacaggcatacggaaaatat
accggattaacttctaccgtaatctttggcggtgttaatcaaagccgtcaggttacagcc
ctgcaaaacggtattgatgtattggttgccactccgggccgtttactggatctgatgaac
cagggttttatttcattgcgccacattgaaatatttgtactcgatgaagccgacaggatg
ctggacatgggttttgtacatgatgtaagacgcctgctgcttgctttgcctgccaaacgt
cagtcgctgttcttctctgcaacgatgcctcctgaaattgtaaaacttgcagataatatt
ttagtaaatccgtcaaaagtagaagtaaccccggtttcatctacagccgatacaatcaaa
cagttcatgtactttgttgacagaggaaataaaaacaatctgttggttgaagtattacag
gatcccaaaataaaaacctgccttgttttcacacgtaccaaacacgttgcagataaagtt
gtaaaaatgctggcggagcataaaattaaagcagaagccatccacggaaataaaagtcag
aatgcacgccagaatgcattgactaacttcaaagcacaaacaacacggatattggttgct
actgatattgcagcacgtggtattgacgtagacaatttagaatttgtgatcaattacgaa
attccgaatattccggaaacgtatgtacaccgcattggtcgtacaggcagagcgggtgca
aaaggaacagctttctctttctgcgatgcggaagaaaaagcatatctgaaagatattgaa
aaactgatttcaaaaaagattcctgttattgatgaacatccgtatccattgatggaccac
aatccgccaaagacaccacaaggccgccagcagcgccctgcctcatcatcacgacctaag
gcagcctccggagcaaacagcggaagttcacgtgcaggaaatgccggcggaagccagcgc
agcagtggttcttcttcccgcagcggaagcagtacaggcaaaaagaaatggtatggcaaa
tccggatcgaatactaaataa
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