Cytophaga hutchinsonii: CHU_3136
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Entry
CHU_3136 CDS
T00385
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
chu
Cytophaga hutchinsonii
Pathway
chu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CHU_3136 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chu03021
]
CHU_3136 (rpoA)
03400 DNA repair and recombination proteins [BR:
chu03400
]
CHU_3136 (rpoA)
Enzymes [BR:
chu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CHU_3136 (rpoA)
Transcription machinery [BR:
chu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CHU_3136 (rpoA)
DNA repair and recombination proteins [BR:
chu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CHU_3136 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
LRR_EndoS
Motif
Other DBs
NCBI-ProteinID:
ABG60376
UniProt:
Q11QD8
LinkDB
All DBs
Position
complement(3584589..3585578)
Genome browser
AA seq
329 aa
AA seq
DB search
MSILSFQMPEKVVMEKADDFHGLFEFKPLEKGYGVTIGNALRRILLSSLEGYAITGIKVP
GVLHEFSTIPGVREDVTEIILNLKQVRFKKISDVNENKIVVSIKKQASFKAGDIAKFTSA
YQILNPELLICNVDSNSNFDIELTLEKGRGYLPAEENKPAEQIFGYIPIDAIFTPIKNVK
YSVENTRVEQRTDYEKLILEILTDGSIHPEDALKGAANILIKHFMLFSDQTMTFEAVKAE
EEETVDEEFLHMRKLLKTSLADLDLSVRAYNCLKAADIKTLGELATLDISDMMKFRNFGK
KSLNELEQLIIDKNLSFGMDTAKYKLDED
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgtctattctttcttttcaaatgccagaaaaagtggtaatggaaaaagcagacgatttt
catggtctgttcgaattcaagccgcttgaaaaaggatatggtgtaactatcggtaatgct
ttaagaagaattttattatcttctcttgaaggttatgcgatcacaggaatcaaagttcct
ggcgtgttacacgagttctcaacaattcctggcgtaagggaagatgtaactgagattatc
ttgaaccttaagcaagttcgtttcaaaaagatttctgacgtgaacgaaaataaaatcgtt
gttagtatcaagaaacaagcttctttcaaggctggagatattgctaagtttacttctgct
tatcagatcctaaaccctgaattattaatctgcaatgtagattctaattcaaactttgac
attgagctaacacttgaaaaaggtcgtggttatttgcctgcagaagagaacaaaccagca
gaacaaatctttggttatattccaatcgatgctatttttacacctatcaaaaatgtaaaa
tacagcgttgagaatacaagggtagaacaaagaacggattacgaaaaactaattcttgaa
atattaacggatgggtctattcacccggaagatgcattgaaaggtgctgctaatatttta
ataaaacacttcatgttattctcagatcaaacaatgacgtttgaagctgtgaaagctgag
gaagaagagacagttgatgaagaattcttacacatgagaaaacttcttaaaacttctctg
gctgatctagacttgtctgtacgtgcttacaactgtttaaaggctgctgatatcaaaaca
ttaggagagcttgctactcttgatatttctgacatgatgaagttccgcaactttggtaag
aagtctctaaacgagttagagcagttaattatagataaaaacttatcctttggaatggat
acggctaagtacaaacttgacgaggattaa
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