Campylobacter helveticus: CHELV3228_0870
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Entry
CHELV3228_0870 CDS
T04807
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
chv
Campylobacter helveticus
Pathway
chv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHELV3228_0870 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chv03019
]
CHELV3228_0870 (rnr)
03016 Transfer RNA biogenesis [BR:
chv03016
]
CHELV3228_0870 (rnr)
Enzymes [BR:
chv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CHELV3228_0870 (rnr)
Messenger RNA biogenesis [BR:
chv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CHELV3228_0870 (rnr)
Transfer RNA biogenesis [BR:
chv03016
]
Prokaryotic type
tRNA degradation factors
CHELV3228_0870 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
CSD2
Motif
Other DBs
NCBI-ProteinID:
ARE80463
UniProt:
A0ABY3L201
LinkDB
All DBs
Position
complement(842811..844730)
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AA seq
639 aa
AA seq
DB search
MKEFLKSLSYGISENQVANEFKQILRELLASNILKEYKKKYYLNNGYVFGELDISSKGTG
FLSVYDENFPNDLLIENKHLKGANYKDIVAAKLLPLKKKRASAKVILVLKKANETSIVVT
KKYGEAVLGLNIKTGLSTTLKASQKSLKALPLGSVLKIENSNNEILEVLGHIDDEAVDEK
ISLALFNKNSEFSQTCIEESLANGDYVDASMYPNRVDLRHLSFCTIDPIHAKDFDDAIYY
DVEKKEIYVAIADVSEYVFAYCAIDKEARHRGFSIYFPHISIPMLPRPLSENICSLKPNL
DRLVYCFKITLDKNNEVCKEELFEAIINSKRRFHYDEVDEILEKKSDLGAISWLHKLFSL
TQILRKERLKNAFEFKTEELRMFLDENLSLKSTFYEKDTPSHGLIEDCMLLANKAAAKML
DEVGVFRNHAPADSKKIDKLLEELSLLGIDVNYKNNLSELIRDVQALADELDIRAQVDKL
IIKAQKKACYASENEGHFGLGFEKYTHFTSPIRRYSDLILHRLLKAKQKNDSRLYEYLLL
NIQSTCESLSILEREADKVAYDFMDRKFARWAKRNVGKIFNAFISENDTLDIAKLDDEIK
GAKLILEHNKSNLLQKVRVQIIDADIIAAKIFGRVVEEL
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagagtttttaaaaagtttaagttatggcataagtgaaaatcaagttgcaaatgaa
tttaagcagattctaagagagcttcttgcctcaaatatcttaaaagaatacaagaaaaaa
tactatcttaataatggttatgtttttggagagcttgatatatcaagcaaaggcacaggc
tttttaagtgtgtatgatgaaaattttcctaatgatttattgatagaaaataaacattta
aaaggggcaaattataaagatatcgttgcggctaaattgttgccacttaagaaaaaaaga
gcgagcgctaaggtgattttagtgcttaaaaaggcaaatgaaacttccatagtcgttaca
aaaaaatacggcgaagcagtgctagggcttaatatcaaaacaggacttagcaccacactt
aaagcctcgcaaaagtctttaaaagctcttccgcttggaagtgtcttaaaaatagaaaat
tcaaataacgaaattttagaagttttagggcatattgacgatgaagcggttgatgaaaaa
atttcactcgctctttttaataaaaatagcgaattttcccaaacctgcatagaagaatct
ttagctaatggtgattatgtcgatgcgagtatgtatcctaatcgcgtggatttaaggcat
ttaagtttttgcacgatagaccctatccacgcaaaagattttgacgatgcgatttattat
gatgtggagaaaaaagaaatttatgtggcgattgccgatgtgagtgagtatgtttttgct
tattgtgcgattgataaagaagcaagacatagaggcttttctatctattttccacacatt
tctatccctatgttaccacgccccttaagtgaaaatatctgctctttaaaaccaaattta
gaccgcttggtttattgttttaaaatcactttagacaaaaataatgaagtgtgcaaagaa
gagctttttgaggctattatcaattcaaaaaggcgttttcattacgatgaagttgatgaa
attttggagaaaaaaagcgatttaggtgcaatttcttggcttcataagctttttagcctc
acgcaaattttaagaaaagaacgccttaaaaatgcctttgaatttaagaccgaagaatta
agaatgtttttagacgaaaatttaagcctaaaaagcaccttttatgagaaagatacaccc
tcgcacggcttgattgaggattgtatgcttttggcaaacaaggctgcagctaaaatgctt
gatgaagtgggtgtatttagaaatcacgccccagccgatagcaagaaaatcgacaaactt
ttagaagagcttagtttgttaggcattgatgtcaattataaaaataatcttagtgagtta
atacgcgatgtccaagccttagccgatgagcttgacattagagcgcaggtggataagctc
atcattaaagcacaaaaaaaggcttgttatgcaagtgaaaatgaggggcattttgggctt
ggctttgaaaaatatacgcacttcaccagccccattagaagatattctgatttaatttta
cacagacttttaaaagcgaagcaaaaaaatgattctaggctttatgaatatttactttta
aatatacaaagcacttgcgaaagtttaagcatacttgaaagagaagcggataaggtcgct
tatgattttatggataggaaatttgcaaggtgggcaaagcgtaatgttggtaaaattttt
aacgcctttattagtgaaaatgatacacttgacatcgctaaacttgacgatgagattaag
ggggcgaagcttattttagagcataataaaagcaatcttttgcaaaaagttagagtgcaa
atcatagacgcagacatcatcgctgcgaaaatttttgggcgtgttgtcgaggagctttga
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