KEGG   Capra hircus (goat): 100860743
Entry
100860743         CDS       T02910                                 
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
  KO
K19719  collagen type II alpha
Organism
chx  Capra hircus (goat)
Pathway
chx04151  PI3K-Akt signaling pathway
chx04510  Focal adhesion
chx04512  ECM-receptor interaction
chx04518  Integrin signaling
chx04974  Protein digestion and absorption
chx05165  Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:chx00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    100860743 (COL2A1)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100860743 (COL2A1)
   04518 Integrin signaling
    100860743 (COL2A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100860743 (COL2A1)
 09150 Organismal Systems
  09154 Digestive system
   04974 Protein digestion and absorption
    100860743 (COL2A1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    100860743 (COL2A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:chx00536]
    100860743 (COL2A1)
Glycosaminoglycan binding proteins [BR:chx00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100860743 (COL2A1)
SSDB
Motif
Pfam: Collagen COLFI VWC VWC2L_2nd
Other DBs
NCBI-GeneID: 100860743
NCBI-ProteinID: XP_017903357
LinkDB
Position
5:31857800..31888050
AA seq 1487 aa
MIRLGAPQTLVLLTLLVAAVLRCHGQDVQKAGSCVQDGQRYNDKDVWKPEPCRICVCDTG
TVLCDDIICEDMKDCLSPETPFGECCPICSADLPTASGQPGPKGQKGEPGDIKDIVGPKG
PPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMG
PRGPPGPPGKPGDDGEAGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKG
EAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVG
PAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAKG
SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG
APGPAGEEGKRGARGEPGGAGPAGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAG
PKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG
PSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGSQGLQGARG
LPGTPGTDGPKGAAGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPG
KDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGTAGARGAPGERGETGPPGPAGFAGPPG
ADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPG
AAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGDPGLQGPAGPPGEKGEPG
DDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPG
PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG
PVGKQGDRGEAGAQGPMGPAGPAGARGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQG
LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAG
PPGNPGPPGPPGPPGPGIDMSAFAGLGQREKGPDPLQYMRADEAAGNLRQHDAEVDATLK
SLNNQIESLRSPEGSRKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAMKVFCNMETG
ETCVYPNPASVPKKNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRL
LSTEGSQNITYHCKNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTK
HTGKWGETVIEYRSQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCFL
NT seq 4464 nt   +upstreamnt  +downstreamnt
atgatccgcctcggggctccccagacgctggtgctgctgacgctgctcgtcgccgctgtc
cttcggtgtcacggccaggatgtccagaaggctggcagctgtgtgcaggacgggcagagg
tataatgataaggatgtgtggaagcccgagccctgccggatctgtgtctgtgacactggg
actgtcctctgcgacgacataatctgtgaagacatgaaagactgcctcagccccgagacc
cccttcggagagtgctgccccatctgctcagctgacctccccactgccagtgggcaacca
ggaccaaagggacagaaaggagaacctggagacatcaaggatatcgtaggacccaaggga
cctcctggacctcagggacctgcaggtgaacaaggacccagaggtgatcgtggtgacaaa
ggtgaaaaaggtgctcctggacctcgtggcagagatggagagcctgggacccctggaaac
cctggcccccctggtcctcccggcccccccggcccccctggccttggtggaaactttgct
gcccagatggctggtggatttgatgagaaggctggtggcgcccagatgggagtaatgcag
ggaccaatgggccccatgggacctcggggacccccaggccctgctggtgctcccggacct
caaggatttcaaggcaaccctggtgaacctggggaacccggtgtctctggtcccatgggc
ccccgtggtcctcctggcccccctgggaaacctggtgatgatggcgaagccggaaagcct
ggaaaatctggcgagagaggccctcctggccctcagggtgctcgcggcttcccaggaacc
ccaggccttcctggtgtcaaaggtcacagaggttacccaggtctagatggtgctaaggga
gaagctggtgctccgggtgtgaagggtgagagtggttccccaggtgagaacggttctcca
ggcccaatgggtccccgcggcttgcctggtgagagaggacggactggccctgccggcgct
gcaggtgctcgaggcaatgacggtcaaccaggccctgcagggcctccgggtcccgtgggt
cctgctggcggtcctggcttccccggtgctcctggtgccaagggtgaagctggccccacc
ggtgctcgaggtcccgaaggcgcccagggtcctcgtggtgaacctggtactcctgggtcc
cctgggccagctggcgccgctggcaaccctggaactgacggaatccctggagccaaggga
tctgctggtgcccctggcattgctggtgctcccggcttccctggaccccgtggtccaccc
ggccctcaaggtgcaactggtcctctgggcccgaaaggtcaaacgggtgagcctggtatt
gctggcttcaaaggcgaacaaggccccaagggagaaccgggccctgctggtccccaagga
gcccctggtcctgctggtgaagaagggaaaagaggtgcccgtggagagcctggtggtgct
gggcccgccggtccccctggagaaagaggcgctcctggcaaccgtggtttcccaggtcag
gatggtctggcaggtcccaagggagcccctggagagcgaggacccagtggccttgctggt
cccaaaggagccaacggtgaccctggccgtcccggagagcctggccttcctggagcccgg
ggtctcactggtcgccctggtgatgctggtcctcaaggcaaagttggtccttccggagcc
cctggtgaagatggtcgccctggacccccaggccctcagggagctcgtgggcagcctggt
gtcatgggtttccctggccccaaaggtgcaaatggtgagcctggcaaagctggtgagaaa
ggactgcctggtgctcctggcctgagaggtcttcctggcaaagatggtgagacaggtgct
gcaggcccccctggacccgctggaccagctggtgaacgaggcgagcagggtgctcctggg
ccatctgggttccagggacttcctggccctcccggccccccaggtgaaggtggaaaacca
ggtgaccagggtgttcctggtgaagctggagctcccggccttgtgggtcccaggggtgaa
cgaggtttccccggagaacgtggctcccctggttcccagggcctccagggggcccgcggc
ctccccggcactcctggcaccgatggtcccaaaggcgcagctggcccagctggcccccct
ggggctcagggccctccaggtctacagggcatgcccggcgagaggggagcagctggtatt
gccggacccaagggagacaggggtgacgttggtgagaaaggccctgagggcgcgcccggg
aaggacggtggacgaggtctgactggccccattggcccccctggcccagccggtgccaac
ggtgagaagggagaagttggaccccctggtcctgctggaactgctggtgctcgcggcgcc
ccgggtgaacgcggagagacaggcccccctggacccgctggattcgccggcccccctggt
gctgatggccagcctggtgccaaaggtgaacaaggagaagccggccagaaaggtgacgct
ggtgcccccggtcctcagggcccctctggagctcctgggcctcagggtcctactggtgtg
actggtcctaaaggagcccgaggtgctcaaggcccccccggagctaccggattccccgga
gcagctggccgcgtcggacccccaggctccaatggcaaccctggaccccccggtcctcct
ggtccttctggaaaagatggtcctaaaggtgctcgaggagacagcggcccccctggccga
gctggtgaccctggcctccaaggtcctgctggaccccctggcgagaagggagagcctgga
gatgatggcccttctggtcccgacggtcctccaggtcctcagggtctggctggtcagagg
ggcatcgttggtctgcctggacagcgtggtgagagaggattccccggcctccccggcccc
tcgggtgagcctggcaagcagggagcccctggagcatctggagaccgaggtccccctggc
cctgtgggtcctcctggcctgactggtcctgctggcgagcctggacgtgagggaagcccc
ggtgctgacggcccccctggcagagatggcgcagctggagtcaagggtgaccgtggagag
actggtgctgtgggtgcccctggagcccctgggccccctggctctcctggtcccgccggc
ccagttggcaagcagggagaccgaggagaagctggcgcacaaggtcccatgggacctgca
ggacctgctggagcccggggaatgccaggccctcaaggcccccgaggtgacaaaggagaa
actggagaggctggcgagaggggactgaagggacaccgtggcttcaccggtctgcagggt
ctgcccggcccccctggtccttctggagaccagggtgcctccggtcctgcaggtccttct
ggccccagaggtcctcctggccccgtcggtccctctggcaaagatggtgctaacggaatc
cctggccccattggacctcctgggccccgtggacgttctggcgaaactggccctgctggt
cctcctggaaaccctggcccccctggccctcctggcccccccggccctggcattgacatg
tccgcctttgctggccttggccagagagagaagggccccgaccccctgcagtacatgcgg
gctgacgaggcagccggcaacctgagacagcatgacgccgaggtggacgccacactcaag
tccctcaacaaccagatcgagagcctccgcagccctgaaggctcccgcaagaacccagct
cgcacctgccgagacctgaaactctgccaccctgagtggaagagcggagactactggatc
gaccccaaccagggctgcaccctggatgccatgaaggttttctgcaacatggagactggc
gagacctgcgtctaccccaacccggccagcgtccccaagaagaactggtggagcagcaag
agcaaggacaagaaacacatctggtttggagaaaccatcaacggtggcttccacttcagc
tatggagatgacaacctggctcccaacaccgccaacgtccagatgaccttcctgcgcctg
ctgtccaccgagggctctcagaacatcacctaccactgcaagaacagcattgcctacctg
gacgaagctgctggcaacctcaagaaggctctgctcatccagggctcaaacgacgtggag
atccgggctgagggcaacagcaggttcacatacaccgttctgaaggatggctgcacgaaa
cacaccggtaagtggggcgagactgtgattgagtaccggtcacagaagacctcacgtctc
cccatcattgacattgcacccatggacataggagggcccgagcaggaattcggtgtggac
atagggcctgtctgcttcttgtaa

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