Capra hircus (goat): 102171120
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Entry
102171120 CDS
T02910
Symbol
PALB2
Name
(RefSeq) partner and localizer of BRCA2
KO
K10897
partner and localizer of BRCA2
Organism
chx
Capra hircus (goat)
Pathway
chx03440
Homologous recombination
chx03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102171120 (PALB2)
03460 Fanconi anemia pathway
102171120 (PALB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chx03400
]
102171120 (PALB2)
DNA repair and recombination proteins [BR:
chx03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
102171120 (PALB2)
FA (Fanconi anemia) pathway
Downstream FA components
102171120 (PALB2)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
102171120
NCBI-ProteinID:
XP_005697663
UniProt:
A0A452E2M0
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Position
25:complement(21213976..21238727)
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AA seq
1194 aa
AA seq
DB search
MLFLLAAGQMEEPPGKTLSCEEKEKLKEKLAFLKREYTKTLARLQRARRAEKFKNSLRRT
AEEQDSSLQQEVSTQLTHTEPKNTVSPHDTLQISTHVDEETGEKTPSSLDIEPLLFSSGH
VSVERSCIQGSDDNQKHFPFRVNRPDAKKRQRKLLGRRKKEERTYISQEREPLSDTDSLI
LSGKRLKEQEKINRENPKIPVTELRTYLLSSPKCAIPNSPAPVTETNVGSVLILPSTKPQ
RDVDALLRGNDFPRATTLPLPTPSDSSSGQLLEHKRPQSNCELTTHSLRNISSASPVNLQ
VQKKKMTVSTDNPEVNKAGSISGQAARSPNLGADNSCFINELTCDNLVENENQNLKEQNH
TEMSLKSSNDALGGRNESLLEKEVLSQSKNLSLGVISPVSTEDQIHSCTMLEGLLFPAEY
YVRTTRRMSSCQRKVALEAVIQSHLGVRKKGFKNMSTKSAKKFNVSNEKTKQSEIKVSDT
HADQPSSGSPQKLLSLTEVSFSTDSTEDDFSRKTVTKPSGKKCRGKRKSACTSPLDHHEL
LLPTSGTSGVKKSKEEIALHRDQNEKAVIHSKKRVKGKEGLCQKEDSLSYSNYAYFSSDD
DAFSTPSHKNKMLSSKHLSSFLKITDFQLPDEDFGFLKLEKLKSCSEKQMEPFGSKVHGE
GHLKGESYIVVEEPSPKQSNIEKEGMEEELTTLPGKTHSRMPSQRSQPRGKDLSSSILLF
TPLNSVASDDNDRLTADLCSPAFPILGATPAFGSQAHKEKVSAEAGGQTCSPLRLSHLKA
TVSLPSSRKQCNSWSSPPRLDSSQHVAGRAGQPSCDPDSGPQATTLPTESFTFEASQLQG
SQRHSAEQTEIEVPAWDSLNPGTLQLVSKLKNPSGSCSVDVSATWWEIAGFKEPCIVTAC
EYVVSLWKPLDAWQWEKIYSWHFTEVPVLQIVAVPDVCNLVCVALGNLEIREIRALLCSP
DGKSEKQVLLSSGNIKAVLGLAKRRLVSSSGTLCDQQVEIMTFAEDGGSKEKQLLMPPEE
TILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLF
VVLSHPCAKENELLGSPVFQLIVINPKTTLSMGVMLYCLPHGQAGRFLEGDVKDHFAAAI
LTSGTIAVWDLLLGHCTALLPPVSGQNWSFVKWSGTDSHLLAGQKDGNIFVYRY
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgctctttttgttggccgccggtcagatggaagagcctcctgggaaaactctcagctgt
gaagagaaggaaaagttgaaagaaaaattagcattcctgaaaagggaatacaccaagaca
ttggcccgccttcaacgtgcccgaagagctgagaagtttaaaaattctcttaggagaaca
gcggaagaacaagattcctcactccagcaggaagtttcaacacagctaacccacacagaa
cctaaaaatacagtatctcctcatgacacgttgcaaatcagtacccatgttgatgaagaa
actggagaaaagacacccagctcacttgacattgagcctctgttgtttagctctggacat
gtctcagtggaacgatcatgcatacaaggatcagatgataatcagaaacattttcctttc
agggtcaatcgccctgatgctaagaaaaggcagagaaagctgctggggagaagaaagaaa
gaggagagaacatatatttcacaggagagagaacctctctctgatactgattcactcata
ctctctggaaaaagactaaaggaacaggaaaaaatcaatagagaaaatcccaaaatacct
gtaactgaactaagaacttacctcctttcaagtcctaagtgtgccattccaaattctcca
gcaccagttacagaaactaatgtagggagtgtattaattctaccaagcaccaaaccacag
agagatgttgatgccctccttagaggaaatgatttccccagggcgactactcttcctctg
cctacaccatcagacagcagtagcggtcagctcctcgaacacaagcgccctcaaagtaac
tgtgaacttactactcacagcttaagaaacattagctctgcttcacctgtaaacttacag
gtacagaagaaaaaaatgactgtctctacagataacccagaggtaaacaaagctggaagt
ataagtggccaggcagctagaagtcctaacttaggggcagataactcatgttttataaat
gaactcacttgtgataacttagtggaaaatgaaaaccaaaacttaaaagaacaaaatcac
acagagatgtctcttaaatcttccaatgatgctctcggtggtagaaatgaaagtcttcta
gaaaaagaagttctaagtcagtctaagaatcttagcctgggagtaatttctcctgtttct
acagaagatcaaatacattcttgcacaatgcttgaaggccttctctttcctgcagaatat
tatgttaggacaacacggcgcatgtcaagctgccagaggaaagtagcactggaggctgta
attcagagtcatttaggtgtcaggaaaaaaggctttaaaaatatgagtacaaaatctgct
aaaaaatttaatgtttcgaacgaaaaaactaagcaaagtgaaattaaggtgtctgacaca
cacgcagaccaaccaagttcaggaagtcctcagaaacttctctcattaactgaagtcagc
ttttccactgactccacagaagatgacttttccaggaagacagttaccaagccatcaggt
aaaaaatgcagaggaaaaagaaagtcagcgtgcacctctccgttagatcaccatgaacta
cttttgccaacttctggcacatcaggtgttaagaagtccaaggaagaaattgccttgcac
agagatcagaatgaaaaggcagttattcacagtaagaagagagttaaagggaaggaaggt
ctttgtcaaaaagaggactccctttcttacagtaattacgcttatttctcttcggatgat
gatgctttcagcactccatctcataagaacaaaatgctaagttcaaagcatctgtcatct
tttctcaaaatcacagactttcaattacctgacgaagactttgggtttcttaagcttgaa
aaactgaagtcctgctcagaaaagcagatggagccttttggatcaaaagtacatggagaa
gggcatcttaaaggggaaagttacattgttgtggaggaaccaagccctaaacaaagcaat
atagaaaaggagggcatggaagaggaactaactactctaccaggaaagacacattctaga
atgccaagccaaagaagccagcctcggggaaaggacctttcttcgtccattttacttttc
actcctttgaattctgttgcctctgatgataatgacagactgaccgcagacctgtgctca
cctgctttccccatattaggcgctactccagcttttggctcccaagcccacaaggaaaag
gtgtctgcagaggcgggtggacagacatgctcgccactccgtctttctcacttaaaagcc
acagtcagcctgcctagcagtcgtaaacagtgcaacagctggagcagccccccaagatta
gatagcagccagcatgtggcaggaagagcaggacagccttcctgcgaccctgactctggt
ccccaagcaacaactctgcccaccgagtctttcaccttcgaagcaagtcaactccaggga
tcacagagacattctgctgagcagactgaaatagaggttcctgcttgggatagcttaaac
ccgggcaccctacagctggtttcaaagttaaagaatccttcaggttcttgttctgtggat
gtgagtgccacgtggtgggaaatagctggtttcaaagagccgtgtattgtaactgcttgt
gaatacgtcgtttctctttggaaacctctggatgcttggcagtgggaaaaaatttattcc
tggcactttacagaggttccagtattacagatagttgcagtgcctgatgtttgcaatctt
gtgtgtgtggctttgggaaatttggaaatcagagaaatcagggcactactttgttctcct
gatggtaaaagtgaaaagcaagtgctcctgagttctggaaatataaaagctgtgcttggc
ctggcaaagaggaggcttgtcagtagcagtgggaccctttgtgatcagcaagtcgaaatt
atgacatttgccgaagatggaggaagcaaagaaaaacagcttttgatgccccctgaagag
accatactaacttttgctgaggttcaagggatgcaggaagctctgcttggtaccactata
atgaacaacattgttatttggaacttaaaaactggtcagctcctgaaaaagatgcacatc
gatgattcctaccaagcttcagtctgtcacaaagcttactctgaaatggggctcctgttt
gttgttctgagtcacccttgcgccaaagagaacgagttattgggaagccctgtgtttcag
ctgattgtgattaacccgaagacaaccctgagtatgggtgtgatgctctactgccttcct
cacgggcaagctggaaggttcctggaaggtgacgtgaaagaccatttcgcagcagcaata
ttgacttctggaaccattgccgtttgggacttactcttgggtcactgcactgccctcctt
cctcctgtctctggccagaattggtcttttgttaaatggtcaggtacagattctcatttg
ttggctggacaaaaagatggaaatatatttgtataccgctactaa
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