Capra hircus (goat): 102171213
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Entry
102171213 CDS
T02910
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
chx
Capra hircus (goat)
Pathway
chx04136
Autophagy - other
chx04140
Autophagy - animal
chx04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
102171213 (ATG16L1)
04136 Autophagy - other
102171213 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
102171213 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
chx04131
]
102171213 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
chx03029
]
102171213 (ATG16L1)
Membrane trafficking [BR:
chx04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
102171213 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
102171213 (ATG16L1)
Mitochondrial biogenesis [BR:
chx03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
102171213 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_EIPR1
eIF2A
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_NWD2_C
CCDC93_CC
DUF2332
Vma22_CCDC115
HTH_6
APEH_N
PALB2_WD40
Fez1
Phage_GPO
Motif
Other DBs
NCBI-GeneID:
102171213
NCBI-ProteinID:
XP_017896547
LinkDB
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Position
3:complement(7794236..7838506)
Genome browser
AA seq
623 aa
AA seq
DB search
MSSGLRAAVFPRWKRHISEELRRRDRLQRQAFEEIILQYNKLLEKSDLHSVLAHKLQAEK
HDVPNRHEISPGHDGSWNDSQLQEMAQLRIKHQEELTELHKKRGELAQLVIDLNNQMQQK
DKEMQMNEAKIAEYLQTISDLETECQELRTKLQDLERANQTLKDEYDALQITFTALEEKL
RKTSEENQELVTRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEQDDDI
EVLADETSEHPEETSPVRAISRAATKRLSQPAGGLLDSITNIFGLSESPLLGHHSSDAAR
RRSVSSFPVPQDNVDPHPGTGREVRVPTTAVSVFDAHDGEVNAVQFSPGSRLLATGGMDR
RVKLWEVLGDKCEFKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDYRLRHTL
TGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMS
GHFDKKIRFWDIRSESIVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRINAVRQ
TFSAPGFKCGSDWTRAVFSPDGSYVAAGAAEGSLYIWNVLSGKVEKILSKHHSSSINAVA
WSPAGSHVVTVDKGSKAVLWSEY
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgggcctccgcgccgccgtcttcccgcgttggaagcgccacatctcggaggag
ctgaggcgccgggaccggctgcagaggcaggcgttcgaggagatcatcctgcagtataac
aagttgctggaaaagtcagaccttcattcagtgctggcccataagctacaagccgaaaag
catgacgtaccaaacaggcatgagataagtcccggacatgatggttcgtggaatgatagt
cagctgcaagaaatggcccagctgagaattaaacaccaagaagaactgactgaattgcac
aagaaacgtggggagttagcccagttggtgattgacctgaataaccaaatgcagcagaag
gacaaggagatgcagatgaacgaagccaaaattgcagaatacctgcagaccatctctgac
ctggagaccgagtgtcaggagctgcgcactaagcttcaggaccttgaaagagccaaccag
accctgaaggatgaatacgacgccctgcagatcactttcactgccctcgaggagaagctg
cggaaaacttccgaggagaaccaggagctggtcacccggtggatggccgagaaagcgcag
gaggccaaccgcctaaacgcggagaatgaaaaggactcaaggaggcggcaagcccggctg
cagaaggagctcgcagaagccgcgaaggagcctctgccagttgagcaggatgatgacatt
gaagtcctcgcggatgaaacctctgagcaccctgaggagacctctcccgtgcgagccatc
agcagagcagccactaagcgactctcgcagcctgctggaggccttctggattctatcact
aatatctttggtctgtccgagtctccccttttgggacatcactcttctgatgctgccagg
aggcgctctgtctcttcctttccagttccccaggataacgtggatcctcatcccggtact
ggtagagaagtgcgagtgccgacgactgcagtgtctgtctttgacgcgcatgacggggag
gtcaacgctgtgcagttcagcccaggttcccggctcctggccacaggaggcatggatcgg
agggtgaagctctgggaagtgttaggagacaaatgtgaattcaagggctccctgtccggc
agtaatgcaggaattacaagcattgaatttgatagtgctggatcttacctcttagcagct
tctaatgattttgcaagccgcatctggaccgtggatgactaccggttacggcacacgctc
acgggacacagcggcaaagtgctgtctgccaagttcctgctggacaacgcgcgtattgtt
tctggaagtcacgaccggaccctcaaactctgggatctacgcagcaaagtctgcataaag
acggtatttgcgggatccagctgcaatgacatcgtctgcacagagcagtgtgtgatgagt
gggcattttgacaagaaaattcgtttctgggacatccgatcagagagtattgtccgagag
atggagctcttgggaaagatcactgccctggacttaaacccagaaagaactgaactcctc
agctgctctcgagatgacctgctgaaaattatagacctgcgaataaatgctgtcagacag
acattcagcgcaccaggcttcaagtgcggctccgactggacgagagctgtgttcagccct
gacggcagttatgtagcagcgggcgcggccgagggctcgctgtacatctggaacgtgctg
tccgggaaagtggagaagatcctctcaaagcatcacagctcgtctatcaacgcagtggcc
tggtcccccgccggctcccacgtggtcactgtggacaaaggaagtaaggccgtgctgtgg
tcggagtattga
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