Capra hircus (goat): 102172509
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Entry
102172509 CDS
T02910
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
chx
Capra hircus (goat)
Pathway
chx04612
Antigen processing and presentation
chx05145
Toxoplasmosis
chx05152
Tuberculosis
chx05164
Influenza A
chx05340
Primary immunodeficiency
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09150 Organismal Systems
09151 Immune system
04612 Antigen processing and presentation
102172509 (CIITA)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
102172509 (CIITA)
09171 Infectious disease: bacterial
05152 Tuberculosis
102172509 (CIITA)
09174 Infectious disease: parasitic
05145 Toxoplasmosis
102172509 (CIITA)
09163 Immune disease
05340 Primary immunodeficiency
102172509 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
chx01001
]
102172509 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
chx04054
]
102172509 (CIITA)
Enzymes [BR:
chx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
102172509 (CIITA)
Protein kinases [BR:
chx01001
]
Serine/threonine kinases: Other
TAF1 family
102172509 (CIITA)
Pattern recognition receptors [BR:
chx04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
102172509 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_14
NB-ARC
AAA_16
LRR_9
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
102172509
NCBI-ProteinID:
XP_017896446
LinkDB
All DBs
Position
25:9432056..9487197
Genome browser
AA seq
1206 aa
AA seq
DB search
MDHFQTILTRVRMLLSSHRPSQVQALLDNLLAEELLSREYHYALLHESDDEALARKISLT
LLEKGDPDLALLGWIWSGLQAPTAERDLSYKDPGGSGQCPTMELGPLEGSYLELLNSSAD
PLQLYHLYDRMDLTAEEEIDLCSEPDTDTINCEQFSRLLCDMEGDEETREAYANIAELDQ
YVFQDTQLEGLSKDIFIEHIGLEEMTSESVEVLEEAGQKTQKRPFPEELPVDLKHRKLAE
PLTMPVVTGTFLVGPVSDSLAQPCPPPSALFNTEPASSQTQLKDLAPPSSSLLSCLSLPA
GPIQIIPTLSTLPQGLWPISGTGTGVSSILIYQSEMPPARQTPPSSGPAVQSLPKSPDRP
GSTSPFAPSAADLPSMPEPALTSRANLTEDEMSPTKCPAAGGASSKLPKWPESVEQFYQS
LRDKYLAQPTGPEGTVVEMDLVRVRLEKSSGKSQERELATLDWAERQPARGGLAEVLLAA
SDRQQPRETRVIAVLGKAGHGKSHWARAVSQAWAHGQLPQYDFVFWVPCHRLDRLGTSYR
LQDLLSSLGPQPLPVNDEVLSYIARKPNRILLVLDGFEELEAHDGSLHSTGGPGSAEPRS
LRGLLAGLLQRKLLRGCTLLLTAWPRGRLAQSLSKADALFEVAGFSAQQAETYVKHYFES
EGTAEHQERALALLRAQPFLLSHSHSPTVCQAVCQLTEALLQRGDEAQLPSTLTGLYVGL
LGPAARDGPPGALAGLARLAWELGRAHQRGLKAGCFPSAEARAWAVAQGWLRPTPGAPET
ELAFSSFLLQCFLGAVWLALSGEIKDKELPQYLALTPRKKRPYDNWLEGVPRFLVGLVFQ
PRASCLGALAGPAASTSVDRKQKVLTRYLKRLQPGTLRAGRLLELLHCAHEALDPGVWQH
VLQGLPARLSFLGTRLTPPDTHVLGSALEAAGQDFSLDLRSTGIDPSGLGSLVGLSCVTR
FRAALSDTVELWESLQQCGEAKLLRAVEEKFTIEPFKAKSMKDVEDLGNLVQIQRTRSSS
EAAAGELPAIRDLKKLEFALGPVLGPQVFPKLVKILEAFTSLQHLDLDSLSENKIGDEGV
AQLSATFPQLKALETLNLSQNNITDVGACKLAEALPALAASLLRLSLYNNCICDAGAESL
AHVLPDMVSLRVLDVQYNKFTAAGAQQLAAGLRKCPQVKTLAMWTPTIPFGVQEHLQQLD
PRIILR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggatcacttccagaccatcttgactcgggtccggatgttgctctctagccatcggcca
agccaagtgcaggcgcttctggacaacctgctggcggaagagctcctctccagggagtac
cactatgccctgctccatgagtctgatgatgaggctctggccaggaagatctccttgacc
ctgctggagaaaggagacccagacttggccctcttggggtggatctggagtgggctgcag
gcccccacagctgagagggaccttagctacaaggaccctggtggcagtggacagtgccct
accatggagctgggacctctagaaggcagttacttagaacttctcaacagcagtgctgac
cctttgcagctctaccacctctacgaccggatggatctgacagcagaagaagagatagat
ctctgctcagagcctgacacagacaccatcaactgcgaacagttcagcaggctgttgtgt
gacatggaaggggatgaagagaccagggaggcttatgccaatattgcggaattggaccag
tacgtcttccaggacactcagctggagggcctgagcaaagacattttcattgagcacata
ggattggaagaaatgaccagcgagagtgtggaggtgctggaggaagcagggcagaaaact
cagaaaagacccttcccagaggagctgcctgtggatctgaagcaccggaagctagccgag
cccctcaccatgcctgtggtgactggcactttcctggtggggccagtgagcgactccttg
gctcagccctgcccgccgccttctgctctgttcaacacggagccagcatccagccagacc
cagctgaaggacctggcacctccttccagttccttgttgagctgcctgagtcttcccgcg
ggacccattcagattatccccactctctccactctgccccaggggctctggccgatctca
gggactgggacaggggtctccagtatactcatctaccaaagtgagatgcccccggccagg
caaacacccccgtccagcgggcctgctgtccagagccttcccaagtccccagaccggcct
ggctccaccagcccctttgccccgtctgcagctgacctccccagcatgcccgaaccagcc
ctgacctcccgtgcaaacctgacagaggatgagatgtcccccaccaaatgcccagcagct
ggcggggcctccagcaaacttcccaagtggcctgagagcgtggagcagttttaccagtcg
ctacgggacaagtacctggcccagcccaccggcccagaaggcaccgtggtggagatggac
ctggtgagggtgaggctggagaagagcagcgggaagagccaggagagagagctggctacc
ctggactgggcagagcggcagccggcccgagggggtctggccgaggtgctgctggctgcc
agcgaccgccagcagccccgagagacgcgggtgatcgctgtgctgggcaaagcgggacat
gggaagagtcactgggcccgggccgtgagccaggcctgggcccacggccagctgccccag
tacgactttgtcttctgggtcccctgccaccgtttggaccgtctggggacctcctaccgc
ctgcaggatctgctgtcctccctgggcccgcagccgctgccggtgaacgacgaggtcctc
agttacatcgcaaggaagcccaaccgcatcctgctggtcctagatggcttcgaggagctg
gaagcccacgacggctccctacacagcacagggggccccgggtcggcagagccccgctcc
ctccgggggctgctggctggcctcctccagcgcaagctgctgcggggctgcaccctgctg
ctcacggcctggccccggggccgcctggcccagagcctgagcaaggcggatgccctgttc
gaggtggctggcttctcggcccagcaggctgagacctacgtgaagcattactttgagtcg
gaggggaccgccgagcaccaagagagggccctggcactcctgcgggcccagccgttcctc
ctgagccatagccacagccccaccgtgtgccaggccgtgtgccagctcacagaggccctc
ctgcagcggggtgatgaagcccagctgccctccacgctcacgggcctctatgtgggcctg
ctaggcccagcagcccgcgatggccccccgggggctctggcaggactggccaggctggcc
tgggagctgggccgtgcgcaccagaggggcctgaaggcaggctgcttcccgtcggcggag
gcgagggcctgggctgtggcccaaggctggttgcggcccaccccgggggccccagagacg
gagctggccttctctagcttcctcctgcagtgcttcctgggggccgtgtggctggctctg
agcggcgaaatcaaggacaaggagctgccgcagtatctggccttgaccccgaggaagaag
cggccctatgacaactggctggagggtgtgccgcgcttcttggtcggactggtcttccag
cctcgtgccagctgcctgggggccctggcagggccggcggcctccacatcggtggacagg
aagcagaaggtgctcacgaggtacctgaagcgtctgcagcccgggacgctgcgggcaggg
cggctgctggagctgctgcactgtgcccacgaggcactggaccccggggtctggcagcac
gtgctgcaggggctcccagcccgcctctccttcctgggcacgcggctcacacctcccgac
acccacgtgctgggcagcgccctggaggcggcgggccaagacttttccctggacctccgc
agcactggcatcgacccttctggcctggggagcctcgtgggactcagctgtgtcacccgt
ttcagggctgcattgagtgacactgtggagctgtgggagtccctgcagcagtgtggggag
gccaagctactccgggcggtggaggagaagttcaccattgagcctttcaaggccaagtcc
atgaaagatgtggaagaccttggcaatctcgtgcagatccagaggacaagaagctcctct
gaagcagcagctggggagctccctgctatccgagacttaaagaagctggagtttgcgctg
ggccctgtcttgggcccacaggtttttcctaaactggtgaagatcctcgaggcctttact
tcccttcagcatctggacctggactcgctgagcgagaacaagatcggggacgagggtgtt
gcccagctctcagccaccttccctcagctgaaggccctggagacactcaacttgtcccag
aacaacatcaccgacgtgggtgcctgcaagctggccgaggctctgcccgcgctggccgcc
tccctcctcaggctgagcttgtacaataactgtatctgcgacgcgggagccgagagcctg
gcacatgtgcttccagacatggtgtccctccgggtgctggacgtccagtacaacaagttc
acagccgctggggcccagcagcttgccgctggcctgagaaagtgccctcaggtgaagaca
ctggcgatgtggacgcccaccatcccctttggcgtccaggaacatctgcagcagctcgac
ccacgaatcattctgagatga
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