KEGG   Capra hircus (goat): 102172730
Entry
102172730         CDS       T02910                                 
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
  KO
K08735  DNA mismatch repair protein MSH2
Organism
chx  Capra hircus (goat)
Pathway
chx01524  Platinum drug resistance
chx03430  Mismatch repair
chx05200  Pathways in cancer
chx05210  Colorectal cancer
Brite
KEGG Orthology (KO) [BR:chx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    102172730 (MSH2)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    102172730 (MSH2)
  09162 Cancer: specific types
   05210 Colorectal cancer
    102172730 (MSH2)
  09176 Drug resistance: antineoplastic
   01524 Platinum drug resistance
    102172730 (MSH2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:chx03400]
    102172730 (MSH2)
DNA repair and recombination proteins [BR:chx03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     102172730 (MSH2)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_II MutS_IV MutS_I AAA_27
Other DBs
NCBI-GeneID: 102172730
NCBI-ProteinID: XP_005686632
LinkDB
Position
11:29370644..29455779
AA seq 934 aa
MAVQPKDTLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHQEDALLAAREVFKT
QGVVKYMGPTGAKTLESVVLSKMNFESFVKDLLLVRQYRVEVYKNRAGNKASKENDWYLA
FKASPGNLSQFEDILFGNNDMSASIGVVGVKMSTVDGQRQVGVGYVDATQRKLGLCEFPD
NDQFSNLEALLIQIGPKECVIPGGETAGDMGKLRQVIQRGGILITERKRADFSTKDIYQD
LNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFELTTFDFSQYM
KLDIAAVRALNLFQGSVEDTSGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERL
NLVEAFVEDAELRQSLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQA
LEKYEGKHQALLLAVFVTPLIDLRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSE
LREIMDDLEKKMQSTLVSAARDLGLDPGKQIKLDSSTQFGYYFRVTCKEEKVLRNNKNFS
TVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTFNDVLA
QLDAVVSFAHVSNAAPVPYVRPVILEKGRGKITLKASRHACVEVQDEVAFIPNDVHFEKD
KQMFHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCEWAEVSIVDCILARVGAGDSQLK
GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF
ATHFHELTALANQISTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVAELANFPRHV
IECAKQKALELEEFQNIGKPQECDEMEPAAKRCYLEREQGEKIIQEFLSKVKQVPFTEMS
EESITRKLKQLKAEVIAKNNSFVNEIISRIKVTA
NT seq 2805 nt   +upstreamnt  +downstreamnt
atggcggtgcagccgaaggacacgctgcagctggagagcgcggccgaggtcggctttgtg
cgcttcttccaaggcatgccggagaagccgaccaccacagtgcgcctttttgatcgaggt
gacttctacaccgcgcaccaggaggacgctctgctggccgcccgcgaagtgttcaagacc
cagggggtggtcaagtatatggggccgacaggagcaaagactctggagagtgttgtgctt
agtaaaatgaattttgagtcttttgtaaaagatcttcttctagttcgtcagtacagagtt
gaagtttataagaacagagctggaaataaggcctccaaggagaatgattggtatttggca
tttaaggcctctccaggtaatctttctcagtttgaagatattctctttggtaacaacgat
atgtctgcttccattggtgttgtgggcgttaaaatgtctacagttgatggtcaaagacag
gttggagttgggtatgttgacgccacacagaggaagctgggactgtgtgagttccccgat
aacgatcagttctccaatctggaggctctcctgattcagattggaccaaaggagtgtgtt
ataccaggaggggagactgctggagacatggggaaactgaggcaggttattcagagagga
ggaattttgattacagaaagaaaaagagctgacttttccacgaaagatatttatcaggac
ctcaaccggttgttgaaaggcaagaagggagaacagatgaatagtgctgtcttgccagaa
atggagaaccaggttgcagtttcttccttgtctgcagtaatcaaatttttagaactctta
tcagatgactcaaactttggacagtttgaactgactacttttgacttcagccagtacatg
aaattggatattgcagcagtgagagcccttaaccttttccagggttctgttgaagatact
tctggctctcagtctctggccgcattgctgaataaatgcaaaacccctcaaggacaaagg
ctggttaaccagtggattaagcagcctcttatggacaagaacagaatagaagagagatta
aatttggtagaagcttttgtagaagatgcagaattgaggcagagtttacaagaagattta
cttcgtcgatttccagatcttaaccgacttgccaagaaatttcaaagacaagcggcaaat
ttacaagattgttaccgactctatcagggtataaatcaactccctaatgttattcaggct
ttggaaaaatatgaaggaaaacatcaggcattgttgctggcagtttttgtgactcctctt
attgatcttcgttctgacttctccaagtttcaagaaatgatagaaacaactttagatatg
gatcaggtggaaaaccatgaattccttgtaaaaccttcatttgatcctaacttgagtgaa
ttaagagaaataatggatgacttagaaaagaagatgcagtcaacattagtaagtgcagct
agagatctaggcttagatcctggcaaacagattaaactggattccagcacacagtttggc
tattatttccgagtaacgtgcaaggaagaaaaagtccttcgtaataataaaaatttcagt
acagtagatatccagaagaatggtgttaaatttacaaacagtaaactgacttctctcaat
gaagagtataccaaaaacaaaactgaatatgaggaagcccagaatgccattgttaaagaa
attgtcaatatttcttcaggctatgtagaaccgatgcagacattcaacgatgtgttagct
cagctggatgctgttgtcagctttgctcatgtgtccaatgcagcacctgttccatatgta
cggccagtcattttggaaaaaggacgagggaaaattacactgaaagcgtccagacatgct
tgtgtggaagttcaagatgaagtcgcatttattcctaatgatgttcactttgaaaaagat
aaacagatgttccacatcattactggtcccaacatgggagggaaatcaacatatattcgc
cagactggggtagtagttctcatggcccagattgggtgttttgtgccatgtgagtgggca
gaagtgtccattgtggactgcatcttggcccgggtaggggctggtgacagtcagttgaaa
ggagtctccacgtttatggctgaaatgttagaaactgcttctattctcaggtctgcaacc
aaagattccttaataatcatagatgaattgggaagaggaacttctacctatgatggattt
ggattagcgtgggctatatcagagtacattgcaacgaagatcggtgctttttgcatgttt
gcaacccattttcatgaacttacagccttggccaatcagatatccactgttaataatctg
catgtcacagcactaactactgaagagactttaactatgctttatcaggtgaagaaaggt
gtctgtgatcaaagttttgggattcatgttgctgagcttgctaatttccccaggcatgta
atagagtgtgccaaacagaaagccctggagttggaggagtttcagaatattgggaaacca
caggaatgtgatgaaatggaaccagcagcaaagaggtgctatctggaaagagagcaaggt
gaaaaaattattcaagaatttctgtccaaggtaaagcaagtgccctttactgaaatgtca
gaagaaagcatcacaagaaagttaaaacagctaaaagctgaggtgatcgcaaagaataat
agttttgtaaatgaaatcatttcccgaataaaggtaactgcgtga

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