Capra hircus (goat): 102173398
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Entry
102173398 CDS
T02910
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2
KO
K14327
regulator of nonsense transcripts 2
Organism
chx
Capra hircus (goat)
Pathway
chx03013
Nucleocytoplasmic transport
chx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102173398 (UPF2)
03015 mRNA surveillance pathway
102173398 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chx03019
]
102173398 (UPF2)
Messenger RNA biogenesis [BR:
chx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
102173398 (UPF2)
mRNA cycle factors
P-body specific factors
102173398 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
102173398
NCBI-ProteinID:
XP_005687910
UniProt:
A0A452FDB7
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Position
13:complement(15959080..16053581)
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AA seq
1271 aa
AA seq
DB search
MPAERKKPASMEEKESLLNSKEKDCSERRPVSSREKPKEEIKLTAKKEVIKVPEDKKKKL
EEDKRKKEDKERKKKEEEKVKAEEELKKKEEEEKKKHEEEERKKQEEQVKRQQEEEAAQL
KEKEESLQLHQEAWERHQLRKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKSCQNKESSKDDSKETKEPKDNKEVSSPDDLELELENLEINDDTLELEGGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
KKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLYK
DLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGV
NSDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVHDLEREFLIKLGLVNDKDSKD
SMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLRKGPPLGGGEGETESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaaaaagccagcaagtatggaagaaaaagaatctttactaaacagc
aaggaaaaagactgcagtgaaaggcggccagtgagcagcagggagaaaccaaaagaggag
atcaagcttactgccaagaaggaggttattaaggtccctgaagataagaagaagaaactg
gaagaagataaaagaaaaaaagaagacaaggaacgcaagaaaaaagaagaagaaaaggtg
aaggcagaggaggaattaaagaaaaaagaggaagaagaaaaaaagaaacatgaagaagaa
gagagaaagaagcaagaagaacaggtgaaacgtcagcaggaagaagaggctgcccagttg
aaagagaaagaggaatcccttcagcttcatcaggaagcttgggaacgacatcagctaagg
aaagaacttcgtagcaaaaaccaaaatgctccagacaaccgaccggaggaaaatttcttt
agccgactagactcaagtttgaagaaaaataccgcttttgtcaagaaactaaaaactatt
acagaacaacagagagactccttgtctcatgattttaatggcctaaatttaagcaaatac
attgcagaggctgtcgcttctattgtggaagcaaagctaaaaatatctgacgtgaattgt
gctgtgcacttatgctcgctctttcaccagcgctacgccgactttgccccatcacttctt
caggtttggaaaaaacattttgaagccaggaaagaagagaaaacacctaacattaccaag
ttaagaactgatttgcgtttcattgcagaattgacaatagttgggattttcactgacaag
gaaggtctttccttaatctatgaacagctaaaaaatattattaatgctgatcgggaatcc
catactcacgtttctgtggtgattagtttttgtcgacattgtggagatgatattgctgga
cttgtaccaaggaaagtaaagagtgctgcagagaagtttaatttgagttttcctcctagt
gagataattagtccagagaaacagcaacctttccagaatcttttaaaagaatactttacg
tctttgaccaaacatctgaaaagggaccacagggagctacagaatactgagagacaaaac
aggcgtattctacattctaaaggggagttaagtgaagatagacataaacagtatgaagaa
tttgctatgtcttatcaaaagctactggcaaattctcaatccttagcagaccttttggat
gaaaatatgccagatcttcctcaagataaaccaacaccagaagagcatgggcctggaatt
gatatatttacacctggtaaacctggagaatatgacttagaaggtggtatatgggaagat
gaagatgctcggaatttttacgagaacctcattgatttgaaagcttttgttccagccatc
ttgtttaaagataatgaaaaaagttgtcagaataaagagtccagcaaggatgattccaaa
gagacaaaggaacctaaggataataaggaagtatcaagtcctgatgatttggaacttgag
ttggagaacctggaaattaatgatgacacattggagctagagggtggagatgaagctgaa
gatcttacaaagaaacttcttgatgagcaagaacaagaagatgaagaagccagcactgga
tctcatctcaagctcatagtagatgctttcctccagcagttacccaactgtgtcaaccgt
gatctgatagacaaggcagcaatggacttttgcatgaacatgaacactaaagcaaatagg
aagaagttggtacgggccctctttatagttcccagacaaaggttggatttgctaccattt
tatgcaagattggttgctacattgcatccctgcatgtctgatgtagcagaggatctttgt
tccatgctgaggggggatttcagatttcatgtacgaaaaaaggaccagatcaatattgaa
acaaagaacaaaactgttcgttttattggagaactcactaagtttaagatgttcacaaaa
aatgatacactgcattgtttaaagatgcttctatcagacttttcccatcaccatattgaa
atggcatgtaccctactggaaacatgtggaagatttcttttcagatctccagaatctcac
ctgaggaccagtgtgcttttggaacaaatgatgagaaagaaacaagcaatgcatctcgat
gcaagatatgtcacaatggtggaaaatgcatattactactgcaacccacctccagctgaa
aaaacagtgaaaaagaaacgtcctcctcttcaggaatatgtccggaagcttttgtacaaa
gatctctccaaggttaccaccgagaaggttttgagacagatgagaaagttgccttggcag
gatcaggaagtgaaagactatgtgatttgttgtatgataaacatctggaatgtgaaatac
aacagcattcactgtgtagccaacctcttagcaggactagtgctctaccaggaagatgtt
ggaatccatgttgtggatggagttttagaagatattcgattaggaatggaggttaatcaa
cctaaatttaatcagagacgtatcagcagtgccaagttcttgggggaactttataattac
agaatggtggaatcggccgttatttttagaactctttattctttcacttcatttggtgtt
aactctgatggctctccaagttcactggaccctcctgagcaccttttcaggattagactg
gtgtgcactatcttggatacctgtggccagtactttgacagaggttccagtaaacgaaaa
ctcgattgcttccttgtgtattttcagcgttatgtttggtggaagaaaagtttggaggtt
tggacaaaagaccatccatttcctattgacatagattacatgatcagtgacacactagaa
ctgctaagaccaaagatcaaactctgtaattctctggaagaatccatcaggcaggtacac
gacttggaacgagaattcttaataaaactaggcctcgtaaatgacaaagactctaaagat
tctatgacagaaggagaaaatcttgaagaagatgaagaagaagaagaaggaggagctgaa
acagaggaacaatctggaaatgaaagtgaagtgaatgagccagaggaagaggagggttct
gataatgatgatgatgaaggagaggaggaagaggaagagaatacagattatctcacggat
tcaaataaagagaatgaaactgatgaagaaaatactgaggtaatgattaaaggaggtgga
ctgaaacatgtaccttgtgtagaagatgaagacttcattcaagctctggataaaatgatg
ctagaaaaccttcagcaacgaagtggcgaatctgttaaagtgcaccaacttgatgttgcc
attcccttgcacctcaaaagccagctgaggaaaggacccccacttggtggtggggaggga
gagacagagtctgcagacacaatgccgtttgtcatgttaacccgaaaaggcaataagcaa
cagtttaagatccttaatgtacccatgtcttcccaacttgctgcaaatcattggaaccag
caacaagcagaacaagaagagaggatgagaatgaaaaagctcacactagatatcaatgaa
cggcaagaacaagaagattatcaagagatgctgcagtctcttgcccaacgcccagctcca
gcaaacaccaatcgggagcggcggcctcgttaccaacacccaaagggagcacctaatgcg
gatctaatctttaagactggtgggaggagacgttga
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