Capra hircus (goat): 102173942
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Entry
102173942 CDS
T02910
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
chx
Capra hircus (goat)
Pathway
chx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102173942 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
chx03041
]
102173942 (SNRNP200)
Enzymes [BR:
chx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102173942 (SNRNP200)
Spliceosome [BR:
chx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102173942 (SNRNP200)
Complex C
U5 SnRNP specific factors
102173942 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Motif
Other DBs
NCBI-GeneID:
102173942
NCBI-ProteinID:
XP_017910335
UniProt:
A0A452FF99
LinkDB
All DBs
Position
11:complement(2312912..2338532)
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLVILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEVVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTVTPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLSKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPLERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISVEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMATQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNALLQLSDSQIADVARFCNRYPNIELSYEVVDKDALRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtaaccgcccgtagcctgcagtacgagtacaaagcgaactcgaatcttgtc
ctccaagctgatcgctctctcattgaccggacccgccgggatgaacccacaggagaagtg
ctgtccctggtggggaagctggagggcacccggatgggagataaggctcaacgaaccaaa
ccacagatgcaagaggaaagaagagctaagcgaagaaagcgtgatgaggaccggcacgac
atcaacaagatgaagggttacactctgctctcagagggcatcgatgagatggtgggcatc
atctataagcccaagaccaaggagacccgggagacctatgaagtgctgctgagtttcatc
caggctgcccttggggaccagccacgtgatattctttgtggggcagcagatgaagttctc
gctgttttaaagaatgaaaagcttcgggacaaggaaaggagaaaggagattgatctgctg
ctcggtcagacagatgataccagataccatgtgctagtaaatttgggcaaaaagatcaca
gactatggtggagacaaggagatccagaatatggatgacaacattgatgagacatatggt
gtgaatgtacagtttgagtctgatgaggaggaaggtgatgaagatgtgtacggggaggtt
cgtgaagaggcatctgatgacgacatggaaggggatgaggccgtggtgcgctgcaccctc
tcagctaatcttgtggcctcaggggaactgatgagttccaagaagaaggatctgcaccct
cgggacattgatgccttttggcttcagcggcagctcagtcgcttctacgatgatgctatt
gtgtcccagaagaaagcagatgaggtgctggagattttgaagacggccagcgacgaccgg
gagtgtgagaaccagctggttctgctcctcggtttcaacacttttgattttatcaaggtg
ttgcggcagcacaggatgatgattttgtactgtaccttgctggccagtgcacagagtgaa
gctgaaaaggagaggatcatgggaaagatggaggctgacccagagctgtccaagttcctc
taccagctgcatgaaacggagaaagaggatctgatccgagaggaacggtcccgcagagag
cgggtgcgtcagtcccggatggacactgacctggaaaccatggatctggaccagggcgga
gaggcactggctccacggcaggttctggacttggaggaccttgtatttacccaggggagc
cactttatggccaacaaacgctgccagcttcctgacgggtccttccggcgccagcgcaag
ggctatgaagaggtgcacgtgcctgccctgaagcccaagcccttcggctctgaagaacaa
cttcttccagtggagaagctgcccaagtatgcccaggctggctttgagggcttcaaaacg
ctgaatcggatccagagtaagctctaccgtgccgccctggagacggatgaaaatctgctg
ctctgcgctcctacaggtgccgggaagaccaacgtggccctgatgtgtatgctccgagag
atagggaagcacattaacatggacggcaccatcaacgtggacgacttcaagatcatctac
atcgcccccatgcggtctctggtgcaggagatggtgggcagttttggaaagcgcctggcc
acatatggcatcaccgttgcagagctgactggcgaccaccagctgtgtaaggaggagatc
agcgccacccagatcatcgtctgcacccccgagaagtgggacatcattacccgcaagggc
ggggaacgcacctacacccagctcgtgcggctcgtcatcctggatgagatccatcttctc
cacgatgacagaggccctgtcctagaagcgctggtggccagggccatccggaacatcgag
atgacccaggaggacgtccgcctcattggcctcagcgccaccctccccaactatgaagac
gtggccacctttctgcgtgtagaccctgccaagggcctcttctactttgacaacagcttc
cgtccagtgcctctagaacagacatatgtgggcatcacggagaagaaagccatcaagcgt
ttccaaatcatgaatgaaattgtctatgagaagatcatggaacatgctggaaaaaatcag
gtgctggtgtttgtgcactcccggaaggagactgggaagacggccagggccatccgggac
atgtgcctggagaaggacacgctgggtctctttctgagagagggctcggcctccacagag
gtcctccggacagaagctgagcagtgcaagaacctggagctgaaggacctgctgccctat
ggctttgctatccatcacgcgggcatgaccagagttgaccggacacttgtcgaggatctc
ttcgctgataaacacatccaggttttagtttccacagcaaccctggcttggggtgtgaat
ctccctgcccacaccgtcatcatcaaaggcacccaggtgtacagtcccgagaagggccgc
tggactgaactaggagcgctggacatcctgcaaatgctgggacgagcaggccggccgcag
tacgacaccaagggcgaaggcatcctcatcacctcccatggggagctgcagtactacctg
tcgctgctcaaccagcagcttcccattgagagccagatggtgtccaagctgcccgacatg
ctcaacgccgaggtcgtgctggggaatgtgcagaacgcaaaggacgcagtgaactggctg
ggctacgcctacctgtacatccgaatgctccggtccccgaccctctatggcatctctcac
gacgacctcaagggagacccactgctagaccagcgccgactggatctggttcacactgct
gccttgatgctggataagaacaacctggtcaagtatgacaagaagacgggcaacttccag
gtgacagaactgggccgtatagccagccactactacatcaccaatgatacggtgcagact
tacaaccagcttctaaagccgaccctgagcgagattgagctcttcagagtcttctcgttg
tcttcagagttcaagaacatcactgtgagagaggaggagaaactggagctgcagaagttg
ctggagagggtgcccatccccgttaaggagagcattgaggagcccagtgcaaagatcaac
gtgcttctccaggctttcatctcgcagctgaagctggagggctttgcactgatggctgac
atggtctacgttactcagtcggctggccgtttgatgcgggccatctttgaaattgtcctg
aaccgaggctgggcgcagcttacagataagaccctgaacctctgcaagatgatcgacaaa
cgcatgtggcagtccatgtgccctctgcgccagttccggaaactccctgaggaggttgtg
aagaagattgagaagaagaacttcccctttgagcgtctgtacgacctgaatcacaatgag
ataggcgagctcatccgcatgcccaagatggggaagaccatccacaagtacgtccacctc
ttccccaagctggagctgtcggtgcacctgcagccgatcacgcgctccaccctgaaggtg
gagctgaccgtcacgcccgacttccagtgggacgagaaggtccacggttcgtcggaggcc
ttctggattcttgtggaagacgtggacagtgaggtgatcctgcaccacgagtacttcctg
ctcaaggccaagtacgcccaggacgagcacctcatcacgttcttcgtgcccgtctttgag
ccgctgccccctcagtacttcatccgggtggtgtctgaccgctggctttcttgtgagacc
cagctgcccgtctctttccggcacctgatcctgccagaaaagtacccgcccccaactgag
ctgctagaccttcagcccttgcctgtgtctgccctgagaaacagtgcctttgagagcctc
taccaggataaatttcctttcttcaaccccatccagacccaggtgttcaatacagtgtac
aacagcgatgacaacgtgtttgtgggggcccccacgggcagcgggaagaccatctgtgcg
gagtttgccatcctgcggatgctgctgcagaactcggagggccgctgtgtctacatcacc
cccatggaggccctggccgaacaggtgtatatggactggtacgagaagttccaggacagg
ctcagcaagaaggtggtgctgctgacgggggagaccagcacggacctgaagctcctgggc
aaaggcaacatcatcatcagcacgcccgagaagtgggacatcctctcccggcggtggaag
cagcgcaagaacgtgcagaacatcaacctcttcgtggtggacgaggtccacctcatcggg
ggcgagaacgggcctgtcctggaggtcatctgttcccggatgcggtacatctcctcccag
atcgagcggcccatccgcatcgtggctctcagctcctcgctctccaacgcgaaggatgtg
gcccactggctgggctgcagcgccacctccaccttcaacttccacccgaacgtgcgcccc
gtgcccttggagctgcacatccagggcttcaacatcagccacacgcagactcgcctgctg
tccatggccaagcccgtgtaccacgccatcaccaagcactcccccaagaagcccgtcatc
gtcttcgtgccctcccgcaagcagacgcgcctcaccgccatcgacatcctcaccacatgt
gcagccgacatccagcgccagagattcctgcactgcaccgagaaggacctgatcccatac
ctggagaagctgagtgacagcacgctcaaggagacgctgctgaacggggtgggctacctg
cacgaggggctgagccccctggagcggcgcctggtggagcagctcttcagctcaggggcc
atccaggtggtggtcgcttctcggagtctctgctggggcatgaacgtggccgcccacctg
gtgatcatcatggacacccagtactacaacggcaagatccacgcgtacgtggattacccc
atctacgacgttctgcagatggtgggccatgccaaccgccctctgcaggatgacgagggc
cgctgcgtcatcatgtgccagggctccaagaaggatttcttcaagaagttcttgtatgag
cctttgccggtggagtctcacctggaccactgtatgcacgaccacttcaatgccgagatc
gtcaccaagaccattgagaacaagcaggatgctgtggactacctcacctggaccttcctg
taccgccgcatgacgcagaaccccaattactacaacctgcagggcatctcccatcgccac
ctgtcagaccacctgtcagagctcgtggagcagaccctgagtgacctggagcagtccaag
tgcatcagcgtcgaggacgagatggacgtggcgcccctgaacctgggcatgatcgccgcc
tactattacatcaattacaccaccatcgagctcttcagtatgtccctgaacgccaagacc
aaggtgcgagggctcatcgagatcatctccaacgcggccgagtatgagaacatccccatc
cggcaccacgaggacaacctcctgcggcagctggcccagaaggtcccccacaagctgaat
aaccctaagttcaacgacccgcacgtcaagaccaacctgcttctgcaggctcacctgtcc
cgaatgcagctgagtgctgagctgcagtcggatacagaggagatcctcagcaaggccatc
cggctcatccaggcctgtgtggacgtcctctccagcaacgggtggctcagtccggccctg
gcggccatggagctggcccagatggccacccaagccatgtggtccaaggactcctacctg
aaacagctgccgcacttcacctccgagcacatcaaacgttgcacagacaagggggtggag
agtgttttcgacatcatggaaatggaggacgaagagcgcaacgccttgctgcagctgtcg
gacagccagatcgcggacgtggcccgcttctgtaaccgctaccccaacatcgagctgtcc
tacgaggtggtggacaaggatgccctccgcagtggcgggccggttgtcgtgctggtgcag
ctggagcgggaggaggaagtcacaggccctgtgatcgcgcctctcttcccgcagaaacgt
gaagagggctggtgggtggtgatcggagacgccaagtccaacagtctcatctccatcaag
aggctgaccctgcagcagaaggccaaggtgaaactcgacttcgtggccccagccactggc
gcccacaactacaccctgtatttcatgagtgacgcttacatggggtgtgaccaggagtac
aaattcagcgtggatgtgaaagaagcagagacagacagtgactcagattga
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integrated database retrieval system
