Capra hircus (goat): 102174364
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Entry
102174364 CDS
T02910
Symbol
PRPF40B
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
chx
Capra hircus (goat)
Pathway
chx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102174364 (PRPF40B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
chx03041
]
102174364 (PRPF40B)
Spliceosome [BR:
chx03041
]
Complex A
U1 snRNP components
U1 related factors
102174364 (PRPF40B)
Complex B
102174364 (PRPF40B)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
RhoGAP-FF1
WW_2
Motif
Other DBs
NCBI-GeneID:
102174364
NCBI-ProteinID:
XP_017903315
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All DBs
Position
5:complement(29856450..29876898)
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AA seq
897 aa
AA seq
DB search
MSVPDSGPRPPAAPAPFPPGPPMMPPPFMPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGI
MPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALW
SEHVAPDGRVYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKE
SRWTRPKDLDDLEALVKQEAAGKQQQPQTLQPQPPQPQPDPPPAPPGPTLLPTGLLEPEP
GGSEDCTVSEAAQPPEQGFLQQPEEGPGSSAGQHQPPQQEEEESKPEPERSGLSWSNREK
AKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEE
ARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFL
AKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKE
DALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWME
LYPAVSTDIRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKDRGFCVEVNTA
FEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRLRRREAAFRSMLR
QAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLETECQHLHSKGRKHG
RKGKKHHRKRSHSPSVSWRGSESGDEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESG
GAALGGRGSPSSRLLLGSDHGLRKAKKPKKKTKKRRHKSNSPESETDPEEKAAKESDEKE
PEQDKDRDLRRAELPNRSPAFGIKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgtcggttcccgattctggtccccggcccccagcagcgcctgcccccttcccaccgggg
ccccccatgatgccaccacccttcatgcctcctccaggaatccccccaccttttcctcca
atggggctccctcccatgagtcagagaccaccagccataccccccatgccacctggcatc
atgcccccaatgctcccaccaatgggggcaccaccaccactcacacagataccaggaatg
gtacctcccatgatgccaggaatgctgatgccagcagtgcctgtcaccgcagcgacggct
ccgggtgcggacaccgccagctctgctgtggctgggacaggccctccgagggccctatgg
agtgagcatgtggcccctgatgggcgcgtctactactacaatgctgacgacaagcagtcc
gtgtgggagaagcccagcgtgctcaagtccaaggcagagctcctgctgtcccagtgtccc
tggaaagagtacaagtcggacacaggcaaaccttactactacaacaatcagagtaaggag
tcccgctggacccggcccaaggacctggatgacctggaggctctagtcaaacaagaggct
gcagggaaacagcagcagccgcagacactacagccacagcctcctcagcctcagcccgat
cccccacctgcgccgcccggccccaccttgctgcccacaggcctcctagaacctgagccg
ggcgggagtgaagattgcaccgtgtcagaggctgcccagcccccagaacaggggttcctg
cagcagccagaggagggccccggcagttctgctggacagcatcagccaccacagcaagag
gaagaagaatcaaaaccagagccggagagatctggcctcagttggagcaaccgggagaag
gcaaagcaggccttcaaggagctgctgagggacaaggctgtcccctccaatgcttcgtgg
gaacaggccatgaagatggtggtcactgacccccgttacagtgccttgcccaaactgagt
gagaaaaagcaggcattcaatgcctacaaagcgcagcgggagaaggaggagaaggaagag
gcccggctaagagccaaggaggccaagcagaccttgcagcatttcctggagcagcatgaa
cgcatgacctccaccactcgctaccggcgggcagaacagacctttggggagctggaggtc
tgggctgtggtccctgagagggatcgaaaagaggtttatgatgatgtcctcttcttcctg
gccaagaaggagaaggaacaagccaagcagctgcggcgccgcaacatccaggccctgaag
agcatcctagatgggatgagtagtgtcaacttccaaaccacatggtcccaggcccagcag
tacctcatggataaccccagctttgctcaggaccatcagctacagaacatggacaaggaa
gatgcgctgatctgctttgaggagcacatccgagctttggagagggaggaggaggaggag
cgagagcgagcccgacttcgggagcggcgccagcagcgcaagaaccgggaggccttccag
accttcctggatgagctgcacgagacagggcagctgcactccatgtccacctggatggag
ctgtacccagcggtcagcactgatatccgctttgccaacatgctgggccagccgggctcc
acccctctggacttgttcaagttctatgtggaggagttgaaggcgcggttccatgatgag
aagaagatcataaaggacatccttaaggaccggggcttctgcgtggaggtgaacacagcc
ttcgaggacttcgcccacgtcataagctttgacaagagggctgctgcgctggatgcaggc
aacatcaagctgactttcaatagtctgctggagaaagcagaggcgcgtgagagagagcgg
gagaaggaggaggcccggcggctgcggcgcagggaagctgccttccgaagcatgctgagg
caggctgtgcctgctctggagctgggcacggcctgggaagaggtccgtgagcgctttgtg
tgcgactcagcctttgagcagatcaccctggagtcggagcggatccggctctttcgggag
ttcctgcaggtactggagacggaatgccagcacctccacagcaaaggccggaaacacggc
agaaagggcaagaagcaccatcgcaagcgttcccactcgccttcagtgagttggcggggc
tctgagtcaggagacgaggagctgcccccgccctctctccggccccccaagcggaggcga
cggaacccctcggagtcgggctctgagccctcttcctcacttgattctgttgaaagtggg
ggtgctgcccttggaggacggggttccccctcctctcgccttctcctcggatcagatcat
ggtcttcggaaagccaagaaaccaaaaaagaaaactaagaagagaagacacaagtcgaac
agtcccgagagcgagacagaccctgaggagaaagctgccaaggagagtgatgagaaagaa
ccagaacaggacaaggacagggacctccggcgggcagagctccctaatcgctccccagcc
ttcggaatcaaaaaggagaagacgggctgggacacgtcggaaagcgagctgagcgagggt
gagctggaaagacggcggcggacgctcttgcagcagctggacgaccaccagtga
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