Capra hircus (goat): 102174703
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Entry
102174703 CDS
T02910
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
chx
Capra hircus (goat)
Pathway
chx04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102174703 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
chx04147
]
102174703 (COL18A1)
00535 Proteoglycans [BR:
chx00535
]
102174703 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
chx00536
]
102174703 (COL18A1)
Exosome [BR:
chx04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102174703 (COL18A1)
Proteoglycans [BR:
chx00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
102174703 (COL18A1)
Glycosaminoglycan binding proteins [BR:
chx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102174703 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
102174703
NCBI-ProteinID:
XP_017907685
LinkDB
All DBs
Position
1:145152446..145246309
Genome browser
AA seq
1546 aa
AA seq
DB search
MAPDPSSRRGHHSLLLLACCLSAAQAQLLSWLWSGNSAWPTAPPASKTSDSSPVWPTEET
TTHVAPRDASTDWWKVPASPTDPLGRPEAGQGQTPAGPTASSSSPDLKEENIAGVGAKIL
NVAQGIRSFVQLWDDAQDTTPAESSARAGMLAPATPTDPLSTALAEGSTRAETPPPTDTT
DTLSTPGPSSTPQDSGTTLQSSTKALSSPDTQMTKAGALPVPTQPPPSPGRPWFRESLVT
PTPDGEVVEVGLQQLLGEPPPWQVAVVHDPAVGPAYEFGEDGSGGGQAARSLLPSTFFQD
FSLLVRVRPASARAGVLFAVTDPAQAVVSVGVKLTAARGGRQHLQLLYTEPGATDTRSAA
SFQLPALDGRWTRLALSVDGAYARLFVDCKEVQGQPLAHSLHDLQLEPDARLFVAQAGGA
DPEKFQGLISELRLRRDPRVSPRQCQDEDEDDDDDGASGDLGSGLMETQEHPREELGTPL
GPRLPEAPPVTSPPLAGVGTEEDLRTEEVEESTTASSLGAQTLPSLGTVGTWDESVWSPG
SSVKEQGLKGQKGEPGAQGPPGPIGPQGPAGPAIDSHEAQPVSGPQGPPGPPGPPGKDGT
PGRDGEPGDPGEDGKPGDTGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPQGPPGPPGPS
FKPDRLTFIDMEGSGFGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSSDVPGPAG
LPGVPGRDGLPGLPGPPGPPGIPGKDGQPGLTGQKGSLGEAGAPGPKGSKGDPGPIGAPG
EHGLAGAPGPAGPPGPPGPPGPPGPGFAAGFDDMEGSGSPFWSTARGADGLQGPPGTPGV
KGDPGAVGPPGSKGEVGADGAPGFPGLPGREGAAGPQGPKGEKGTQGEKGDPGKDGVGQP
GLPGPPGPPGPVVYVSEQDRVLASVPGPEGRAGFAGFPGPAGPKGDLGAKGQQGIPGPKG
EKGEPGTFFSPDGRALTPVQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGMNGLK
GEKGEPGDASVGFGMRGPPGPPGPPGPPGPPGTPVYDSNAFVDSGRPGPPGLPGHQGPSG
PKGDKGDVGPPGPRGQFPFDLLQLGAEMKGQKGERGAAGQKGERGEPGGGGFFGSGVPGP
PGPPGYPGIPGPKGESVRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPGPPSFPGPYR
QTISVPGPPGPPGPPGPPGSMGTSSGGSTGLGFQQVRVWATYQMLVDQVPQVPEGWLIYV
ADREELYVRVRNGFRKVLLEAHTPLPHGTDNEVAVLQPPVVQLHEGNPYPRREAPHPTAR
SWRADDILASPPRLPHPQPYPGAPHHGAYAHFRPVTSTASPSHTHHDFQPVLHLVALNSP
QSGGLRGIRGADFQCFQQARAAGLAGTFRAFLSSRLQDLYSIVRRADRGSLPVVNLRDEV
LFPSWEALFLGSEGWLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDTSGRRLTESYCETW
RTDSRAATGQASSLLSGRLLEQKAAGCHNAFIVLCIENSFMTSSSK
NT seq
4641 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccctagcagccgccgcggccaccacagcctcctgctgcttgcctgctgc
ctctcggccgcccaggctcaactgctgtcctggctatggtccgggaacagtgcctggccc
acagccccaccagcctccaagacctctgacagctcacctgtgtggcccacggaggaaacc
accacgcacgtggccccccgggatgcttccactgattggtggaaagtccctgctagcccc
acagaccctctggggaggccagaggcggggcagggccagacccccgctggccccacagcc
tccagctcgagcccggacctgaaggaggaaaacatcgccggtgtcggagccaagatcctg
aacgtggcgcagggcatccggagcttcgtccagctgtgggatgacgctcaggacaccacc
cctgccgagagctctgccagggcagggatgctggcccccgcgacccccacagaccccctt
tctactgccctagccgagggctccaccagggcagagacaccgcccccaacggacaccacg
gacaccctctccacccctggaccctccagcaccccccaggacagcgggaccaccctccag
tcgagcaccaaggccctgagctctccagacacccagatgaccaaggccggcgccctacca
gtgcccacccagccgccaccctcccctggcagaccctggttcagggagtccttggtaacg
ccgaccccagacggcgaggtcgtggaggtggggctccagcagctgctcggtgagcccccg
ccctggcaggtggccgtggtgcacgaccccgccgtggggcccgcctatgagtttggcgag
gacggcagcggtggaggccaggcggcccggagtctcctgcccagcacgttcttccaggac
ttctcgctgctggtgcgtgtgcggccggcctcggcgcgcgcgggtgtgctctttgcagtc
acagaccctgcgcaggcggtggtctcggtgggcgtgaagctgacggcggcgcgtgggggg
cggcagcacctgcaactgctgtacacggagcccggagccaccgacacgcgctcagccgcc
agcttccagctgcctgcgctggatggtcgctggacgcgcctggcgctcagcgtggatggc
gcctacgccaggctcttcgtggactgtaaggaggtccagggccagcccctggcgcactcg
ctgcacgacctgcagctggagccggacgcccgcctcttcgtggcccaggccggtggagcg
gaccctgaaaagttccagggtctgatctcagagctgaggttgcgcagggatcctcgggtg
agcccccggcagtgccaggacgaggacgaggacgacgatgatgatggggcgtctggagac
ctgggcagcggactcatggagacccaggagcatccccgggaggagttgggcacacccctg
gggcccaggctccccgaggctcctccagtcacttctccacccttggccggagtcggcacc
gaggaggacttgagaactgaggaggtagaggagtcaaccacggcgtcttcgttaggagct
cagaccctccctagcttgggcacagttggcacatgggacgagagtgtttggagccctggg
agcagcgtgaaagagcaaggcctgaaggggcagaagggagagcctggtgctcagggcccc
cctggccccatcggcccccagggtcctgcaggcccagctatagacagccacgaggcacag
cctgtttctggaccacagggaccccctgggcccccgggacccccggggaaggacggcacc
cctggaagggacggtgagcctggtgatcctggtgaagacgggaagcccggggacactggg
ccacagggcttcccaggaaccccaggagacgtgggccccaagggcgagaagggggatcct
ggagtcggaccgaggggacctccaggaccccaggggcctccagggcccccagggccctcc
ttcaaacccgacaggctgaccttcatcgacatggaggggtccggttttggcggcgacctg
gagagcctccgtggccctcgaggcttccccggcccccccgggccccctggtgtcccaggc
ctgccaggggagccaggccgcttcgggatgaacagctctgacgtccctggacccgcaggc
ctgcccggcgtgcctgggagggatgggctgcctgggcttccaggccccccgggaccccca
ggtattccaggaaaagacggacaaccaggactgactggacagaaaggcagcctcggtgag
gcgggcgccccaggacccaagggaagcaagggagaccctggccccatcggcgctcctggg
gagcacggcctggcaggagcccccggacccgcaggcccgccagggccccctggccccccc
gggcccccaggcccaggattcgccgcagggtttgacgacatggaaggctccgggagcccc
ttctggtcaacagcccgaggtgctgacgggctgcagggaccgcccggcacgcccggagtc
aagggggatcctggagctgtggggccaccagggagcaagggagaagttggagcagacgga
gcacctggcttccccggcctcccaggcagagagggtgcagctggaccccagggaccaaaa
ggagaaaaggggactcagggagagaaaggagacccagggaaggatggagtggggcagcca
ggactcccgggaccccctggacccccaggacctgtcgtctacgtgtcggagcaggacaga
gtgctggcaagcgtgccaggccccgagggccgtgcgggcttcgctggctttcccggacca
gccgggccaaagggagacctgggcgccaaaggccagcagggcatcccgggacccaagggt
gagaagggagagccgggcacgttcttcagccctgacggcagagcactgacccccgtccag
aaaggagccaagggtgagcccggcttccgaggacccccgggtccgtatgggcggcccggg
cacaagggagagatcggattccctggacggccggggcgtcccgggatgaatggactgaaa
ggggagaagggggagccgggggacgccagcgtgggattcggcatgaggggtccacctggc
ccacctgggcctccagggcccccaggccctcccgggactcctgtctacgacagcaacgca
tttgtggactctggccgccctggacccccgggattgccagggcaccaggggccttctgga
cccaagggtgacaaaggagatgtgggcccgcccggaccacgagggcagttcccgttcgac
ctcctccagctgggtgccgagatgaaggggcagaagggggaacgaggggccgctgggcag
aaaggagaaaggggtgagcccgggggcggaggatttttcggctccggtgtgcctggaccc
cccggcccgcctggctacccagggattccgggccccaagggagagagcgtccgcggccag
cctggccctccgggacctcagggaccccctggcattggctacgagggacgccaggggcct
cctgggccccctggacccccagggcccccgggacccccttcctttcctggcccctacagg
cagaccatcagtgttcctggcccgccaggcccacctgggcccccaggaccccctggatcc
atgggcacttcttcagggggatccactgggctgggcttccagcaggtgagggtctgggcg
acgtaccagatgctggtggaccaggtgccgcaggtaccggagggctggctcatctacgtg
gccgacagggaggagctgtacgtccgggtccggaatgggttccggaaggttctgctggag
gcccacacgcccctcccccatgggacggacaacgaggtggccgtcttgcagccccccgtg
gtgcagctgcacgagggtaatccctacccccgccgggaggccccacacccgacagcgcgg
tcctggcgggcggacgacatcctggccagtcccccgcgcctgccgcacccccagccgtac
cccggcgccccgcaccacggagcctacgcacacttccggccggtaacctccacggcctcg
ccctcccacacccaccacgacttccagccggtgctgcacctggtggcgcttaacagcccg
cagtcgggcggcctgcgcggcatccgcggcgccgacttccagtgcttccagcaggcgcgc
gccgcggggctggccggcaccttccgcgcgttcctgtcctcgcggttgcaggacctgtac
agcatcgtgcgccgcgccgaccgcggctccctgcccgtcgtcaacctcagggacgaggtg
ctgtttcctagctgggaggccttgttcttaggctccgagggctggctgaagcctggcgcc
cgcatcttctccttcgacggcagagatgtcctccagcatcccgcctggccccagaagagc
gtgtggcacggctcagacaccagtgggcgccggctgaccgagagctactgcgagacgtgg
cggacggacagcagggcggccacgggccaggcctcctcgctcctgtcgggccggctgctg
gagcagaaagctgccgggtgtcacaacgccttcatcgtcctctgcatcgagaacagcttc
atgacctcctcctccaagtag
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