KEGG   Capra hircus (goat): 102176868
Entry
102176868         CDS       T02910                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
chx  Capra hircus (goat)
Pathway
chx03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:chx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    102176868
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:chx03021]
    102176868
   03036 Chromosome and associated proteins [BR:chx03036]
    102176868
Transcription machinery [BR:chx03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     102176868
   Coactivators
    SAGA/TFTC/STAGA complex
     102176868
Chromosome and associated proteins [BR:chx03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     102176868
    STAGA complex
     102176868
    TFTC complex
     102176868
    SAGA complex
     102176868
    SLIK complex
     102176868
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd EIF3I TFIID_NTD2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st CFAP251_N Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_WDR41 ANAPC4_WD40 WDR90_beta-prop_4th DSE1_N Beta-prop_SCAP NBCH_WD40 Beta-prop_VPS8 PAC11 Beta-prop_NOL10_N Beta-prop_SPT8 RMC1_N Tricorn_2nd Beta-prop_HPS5 ASA1 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_EIPR1 Beta-prop_Vps41 Beta-prop_WDR19_1st PEP5_VPS11_N PROPPIN Beta-prop_WDR75_2nd eIF2A TRM82_WD WDR54 vATP-synt_AC39 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 102176868
NCBI-ProteinID: XP_017899216
LinkDB
Position
X
AA seq 588 aa
MEQFRAEEMQMAVSCYLKRRQYRGGDGPPRQGLRLSQSIQDMATSLAVQSESGCANTVSA
APCQADPQQYEVQFGRLRDFLMDSDSQHSDELMPLLYPLFVYLHLDLVQNSSKSTVESFY
SRFHGMFLQNASQKVVIEQLQTTQTIQDLLSNFQLRAFLDNKYVVRLPEDGYNYLLCYLQ
SDNNTALCRVLTWHIHLDVQPAERMDYQLYASGQGSSSRGQGSGLEPTDLPMYILQKEED
LDILQETIKRVQDGPPSLTTIYTYTFYNTEQLLNTAEASPDNKLLASGFNNSRIKLWSLT
SKFKSKPHQVDVSRIHLTYDTLEVDEEDRTAKEMKVLQGHCGPVYSTRFLPDSSALLSCS
EDTSIRYWDLESFTNTVLYQGHAYPVWDLDISPHSLFFASASYDRTARLWSFDRTYPLRI
YAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSLRLFTGHCGPVRCLAFSPNGQ
YLVSAGEDQLLKLWDLASGTLYKELQGHMDDITSVTFSLDSSLIASASMDNSVRIWDIKS
KHNSMPTDGSSSELLGVYTSQMSNVLNVQFMAGNRLLVTGIREENQEH
NT seq 1767 nt   +upstreamnt  +downstreamnt
atggagcagtttcgcgccgaggagatgcagatggccgtgtcctgctacctcaaacgccgg
cagtaccggggcggggacggcccaccgaggcaaggcctgcgactgtcacagagcatccag
gatatggctaccagcctcgcagtccagtcagaatctggttgtgccaacacagtgtctgca
gccccttgccaggcagacccccagcaatatgaagtacagttcggacggctgcgggatttt
ctcatggactctgactcccagcatagcgacgaactgatgcctctcctctaccctctcttt
gtctacctccatctcgacctggtccagaacagttcaaagagcacagtggaaagcttttac
agccgcttccatggaatgtttctccagaatgccagccagaaggtcgtcattgagcagctc
cagaccacccagaccatccaagacctcctgtctaacttccagctgcgggccttcctggac
aacaagtacgtggttcgtctgccagaagacggctacaactaccttctctgctacctccag
agtgacaacaacaccgcgctgtgcagagtcctcacctggcacatccacctggacgtgcag
cccgccgagaggatggactaccagctctatgccagcggccagggcagctcctccagaggc
cagggcagtggcctggagcccaccgacctgcccatgtacatcctgcagaaagaggaggat
ctggacatccttcaggagaccatcaagcgcgtccaggatggccccccctccctcaccacc
atctacacctacaccttctacaacactgagcagctgctgaacacggcggaggcctccccc
gacaacaagctgctcgcctcgggctttaacaactcccgtataaaactgtggagtctgact
tccaagtttaaatccaagccccatcaagtagacgtgtcccgcattcacttgacttatgat
acactggaggtcgacgaggaggacaggacagccaaggagatgaaggttctgcaaggacac
tgtgggccggtgtacagcaccaggttcctcccggacagctcggcgctgctctcctgctct
gaagacacgtccatcaggtactgggacctggagagcttcactaacactgtgctgtaccag
ggccatgcctaccccgtgtgggacctggacatcagcccgcacagcctgttctttgccagt
gcgtcctacgaccgcacagcgcggctgtggtcgtttgatcggacttacccactgcgaatc
tacgccgggcacctggcggatgtggactgtgtcaagttccaccccaattcaaactattta
gccacgggctcgacagacaagacggtgcggctgtggagtgcccagcaggggaactcgctg
agactcttcacaggccactgtggccccgtgcgctgtctggccttttcccccaacggtcag
tacctggtgtcggcaggcgaggaccagctgctgaagctgtgggacctggcatctgggacc
ctctacaaagagctacagggccacatggatgacatcaccagcgtcaccttcagcctggac
agcagcctgattgcatcagcatccatggataactccgtgcgtatctgggacatcaagagc
aagcacaacagcatgcccaccgatggctcgtccagtgagctcctgggcgtctacaccagc
cagatgagcaatgtgctgaatgtgcagttcatggccggcaaccgcctgctggtgaccgga
atcagagaagaaaatcaggaacactga

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