Capra hircus (goat): 102177095
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Entry
102177095 CDS
T02910
Symbol
CASC3
Name
(RefSeq) protein CASC3
KO
K14323
protein CASC3
Organism
chx
Capra hircus (goat)
Pathway
chx03013
Nucleocytoplasmic transport
chx03015
mRNA surveillance pathway
chx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102177095 (CASC3)
09122 Translation
03013 Nucleocytoplasmic transport
102177095 (CASC3)
03015 mRNA surveillance pathway
102177095 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chx03019
]
102177095 (CASC3)
Messenger RNA biogenesis [BR:
chx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102177095 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
102177095
NCBI-ProteinID:
XP_017920512
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Position
19:40078997..40101397
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AA seq
802 aa
AA seq
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MAGQGPEPTARPRATLLARGPTAGKSGASPHPLMSPITQFRAPANVLQRASSAPSPSPRK
TGRPAPQVKHAGTSSQASRQPLRRARYVRIWPAAAVLRKMADRRRQRASQDTEDEESGAS
GSDSGGSPARGGGSCSGSVEGGGSGSLPSQRGGRAGALHLRRVESGGAKSAEESECESED
GIEGDAVLSDYESAEDSEGDDGEYSEEENSKVELKSEANDAANSSAKDEKGEEKPDTKGT
VTGERQSGDGQESTEPVENKVSKKGPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEE
VRPKGRQRKLWKDEGRWEHDKFREDEQAPKSRQELIALYGYDIRSAHNPDDIKPRRIRKP
RFGSPPQRDPNWIGERPSKSHRHQGPGGTLPPRTFINRNAAGTGRMSAPRNYSRSGGFKE
GRTGFRPAEAGGQHAGRSGETVKHETNYRSRHLEQTPVRDPSPEADAQVLGSPEKEEVAP
EIPNPAPDTAPPAPDRPVEKKSYSRARRTRIKAGDAGKVAEEVPPPPEGLTPAPPVPEAT
PPTPVKTGNWEAPVDSTTGGLEQDVAQLNITEQNWSPGQPAFLQSRELRGMPNHIHMGAG
PPPQFNRMEEMGVQGGRAKRYSSQRQRPVPEPPAPPVHISIMEGHYYDPLQFQGPIYTHG
DSPAPLPPQGMIVQPEMHLPHPGLHPHQTPAPLPNPGLYPPPVSMSPGQPPPQQLLAPTY
FSAPGVMNFGNPSYPYAPGALPPPPPPHLYPNTQAPSQVYGGVTYYNPAQQQVQPKPSPP
RRTPQPVTIKPPPPEVVSRGSS
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggccgggcaaggaccggagccgactgcccgcccaagagcaactctcctcgccaggggc
ccaaccgcggggaagtcaggggcctcaccacaccccctcatgtcaccaattacgcaattc
cgcgcacccgcaaacgtgctgcagcgtgccagctccgcccctagcccctccccccgaaaa
acggggcgaccagcgccgcaagtgaagcatgctgggaccagctctcaagcctcccggcag
cccctgcgacgggcgcggtacgtcaggatctggccagcggcggccgttctccgtaagatg
gcggaccggcggcggcagcgcgcttcgcaggacaccgaggacgaagaatctggtgcctcc
ggctcagacagcggcggttccccggcgcggggcggcgggagctgcagcggtagcgttgaa
ggcggcggcagcggctctctgccttcccagcgcggaggccgagctggggcccttcatctg
cggcgagtggagagcgggggcgctaagagcgctgaggagtcggagtgtgagagtgaagat
ggcatcgagggcgatgctgttctctcggattatgaaagtgcagaagattcagaaggcgat
gacggggagtacagtgaagaggaaaactccaaagtggagctgaaatcagaagccaatgat
gctgctaattcttcagcaaaagatgagaagggagaagaaaagcctgacaccaaaggcact
gtgactggagagaggcaaagtggggatggacaggaaagcacagagcctgtggagaacaaa
gtcagtaaaaagggccctaaacatttggatgatgatgaagatcggaagaacccagcatac
ataccccggaaagggctcttttttgagcatgatcttcgagggcagactcaggaggaagaa
gtcagacccaagggacgtcagcgaaagctgtggaaggatgagggtcgctgggagcatgac
aagtttcgggaagatgaacaggctccaaagtcccgacaggagctcattgctctttatggc
tatgacatccgctcagctcacaatcctgatgatatcaaaccccgaagaatccggaaacct
aggtttgggagtcctccacaaagagatccaaactggattggtgagcggccaagtaagtct
caccgccaccagggtcctgggggcaccctaccacccaggacatttatcaacaggaatgct
gcaggtactggccgcatgtcggctcccaggaattactctcgatctggaggcttcaaggaa
ggtcgtactggttttaggcctgcagaagctggtggacagcacgctggccggtctggtgag
actgttaaacatgagactaattaccggtctcggcacttggagcagactcctgtaagggat
ccatctccagaagcagatgctcaagtgcttggcagtcctgagaaggaagaggtagcccct
gagataccaaatcctgctcctgatactgcaccaccagctcctgacaggcctgttgaaaag
aaatcctattcccgggcaagaagaaccagaatcaaagctggagatgcaggcaaggttgca
gaggaggtgccccctccacccgaagggctgaccccagcacctccagttccagaagctaca
cctcctacgcctgttaagactggaaactgggaggctccagtggattctactacagggggt
cttgaacaagatgtggcacaactaaatataacagaacaaaattggagtccagggcagcct
gccttcctgcagtcacgggagcttcggggtatgcccaaccacatacacatgggagcagga
cctccacctcagttcaaccggatggaagaaatgggtgtccagggtgggcgagccaaacgc
tattcatcacaacggcaaagacctgtgccagagccccctgcccctcctgtgcatatcagc
atcatggaaggacattactatgatccattgcagttccagggaccaatctatacccatggt
gacagccctgccccactgcctcctcagggcatgattgtacagccagaaatgcaccttccc
cacccaggtttacatccccatcagacaccggcgcctctgcccaatccaggcctctatccc
ccaccagtatccatgtctccagggcagccaccacctcagcagttgcttgctcctacttac
ttttctgctccaggcgtcatgaactttggtaaccccagttacccttatgctccaggggca
ttgcctcccccaccacctcctcatctgtatcctaacacacaggccccatcgcaggtatat
ggaggagtgacctactataaccccgcccagcagcaggtgcagccaaagccctccccaccc
cggaggactccccagccagtcaccatcaagcccccaccgcctgaggttgtaagcaggggt
tccagctaa
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