Capra hircus (goat): 102177938
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Entry
102177938 CDS
T02910
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X4
KO
K12821
pre-mRNA-processing factor 40
Organism
chx
Capra hircus (goat)
Pathway
chx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102177938 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
chx03041
]
102177938 (PRPF40A)
Spliceosome [BR:
chx03041
]
Complex A
U1 snRNP components
U1 related factors
102177938 (PRPF40A)
Complex B
102177938 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
102177938
NCBI-ProteinID:
XP_013825131
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All DBs
Position
2:complement(92646377..92706042)
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AA seq
929 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQ
MMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNNMDVAAGTTSGAKSMWT
EHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKES
RWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSAAPVPTTEIPTT
MSTMAAAEAAAAVVAAAAAAAAAAAAANASASTSASSTVSGTVPVVPEPEVTSIVATVVD
NENTVTISTEEQAQLTSTPSVQDQSEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTY
TWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQT
EKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIY
EDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEE
LQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLH
SMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGF
VVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKES
AFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHH
SKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKK
SKKHKKKSKKRRHKSDSPDSDAEREKDKKEKDREGEKDRTRQRSESKHKSPKKKTGKDSG
NWDTSGSELSEGELEKRRRTLLEQLDDDQ
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatgaggccggggacg
ggagccgagcgtggaggcctcatgatggggcaccctggcatgcattatgccccaatggga
atgcatcctatgggtcagagagcgaatatgcctcctgtacctcatggaatgatgccacaa
atgatgcccccaatgggaggaccaccaatgggacaaatgcctggaatgatgtcttcagta
atgcctggaatgatgatgtctcatatgtctcaggcttccatgcagcctgccttaccgcca
ggagtaaataatatggatgtagcagcaggtacaacttctggcgcaaaatcaatgtggact
gaacataaatcacctgatggaaggacctactactacaatactgaaacaaaacagtctact
tgggagaaaccagatgatcttaaaactcctgctgagcaacttttatctaaatgcccttgg
aaggagtacaagtctgactctggaaagccttattattacaattctcaaacaaaagaatct
cgctgggccaaacctaaagaacttgaagatcttgaaggataccagaataccattgttgct
ggaagtcttattacaaaatcaaacctgcatgcaatgatcaaagctgaagaaagcagtaaa
caagaagagtgcaccacaacatcagcagccccagttcctacaacagaaattccaaccaca
atgagcaccatggctgctgcagaagcagcagctgctgttgttgcagcagcagccgcagcc
gcagcagctgctgctgcagccaatgccagtgcttccacttctgcctctagtactgtcagt
ggaactgttccagttgttcctgagcctgaggttacttcgattgttgctactgttgtagat
aatgaaaatacagtaacaatttctactgaagaacaagcacaacttactagtaccccttct
gttcaggatcaaagtgaagtgtctagtaatactggagaagaaacatctaagcaggaaact
gtagctgattttactccgaaaaaagaagaggaagaaagccaaccagcaaaaaaaacatat
acttggaatacgaaagaggaggcaaagcaagcatttaaagaattattaaaagaaaagcgt
gtaccatctaatgcttcatgggagcaagctatgaaaatgatcattaatgatccacgatat
agtgctttagcaaagttgagtgaaaaaaagcaggcctttaatgcttataaagtccaaaca
gagaaagaagaaaaagaagaagcaagatccaaatacaaagaagctaaggaatcctttcag
cgttttcttgaaaatcatgagaaaatgacttctacaactagatacaaaaaagcagagcaa
atgtttggagagatggaagtctggaatgcaatatcagaacgtgatcgtcttgaaatctat
gaagatgttttattctttctttcaaaaaaagaaaaggagcaagcaaagcagttgcgaaag
aggaattgggaagccttgaaaaacatacttgacaacatggctaatgtgacatattctact
acttggtctgaagcccagcagtatctgatggataatccaacttttgcagaggatgaggaa
ttacaaaatatggataaagaagatgcattaatttgctttgaggaacacatccgggcttta
gaaaaggaagaggaagaagaaaaacaaaagagtttgcttcgtgaaaggagacgacagcgt
aaaaatagagaatcttttcagatatttttagatgaactgcatgaacatggacaactgcat
tctatgtcatcttggatggaattgtatccaacaattagttctgacattagattcactaat
atgcttggtcagccgggatcaactgcacttgaccttttcaagttttatgttgaggatctt
aaagcacgttatcatgatgaaaagaagataataaaagacattctgaaggataaaggattt
gtagttgaagtaaatactacttttgaagactttgtggcaataatcagttcaactaaaaga
tcaaccacattagatgcaggaaatattaagctggctttcaatagtttactagaaaaggca
gaagcccgtgaacgtgaaagagaaaaagaggaggctcggaagatgaaacgaaaagaatct
gcatttaagagtatgttgaaacaagctactcctccaatagaattggatgctgtctgggaa
gatatccgggagagatttgtaaaagagccagcatttgaggatataactctagaatctgaa
agaaaacgaatatttaaagattttatgcatgtgcttgagcatgaatgtcaacatcatcat
tcaaaaaacaagaagcattctaagaaatctaaaaaacatcacagaaagcgctcccgctct
cgatcagggtcagattcagatgatgatgacagccattcaaagaaaaaaagacagcgatca
gagtctcgttctgcttcagaacattcttctagtgctgaatctgagagaagttataagaag
tcaaaaaaacataagaagaaaagcaagaagagaagacataaatcagactctccagactca
gatgctgaaagagaaaaggataaaaaagaaaaagaccgggaaggcgaaaaagacagaact
agacaaagatcagaatcaaaacacaaatcacctaagaaaaagactggaaaggattctggt
aattgggatacttctggcagtgaactaagtgaaggggaattggaaaagcgcagaaggacc
cttttggagcaactggatgatgatcaataa
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