Capra hircus (goat): 102178669
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Entry
102178669 CDS
T02910
Symbol
COL6A5
Name
(RefSeq) collagen alpha-5(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
chx
Capra hircus (goat)
Pathway
chx04151
PI3K-Akt signaling pathway
chx04510
Focal adhesion
chx04512
ECM-receptor interaction
chx04820
Cytoskeleton in muscle cells
chx04974
Protein digestion and absorption
chx05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102178669 (COL6A5)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102178669 (COL6A5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102178669 (COL6A5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102178669 (COL6A5)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102178669 (COL6A5)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
102178669 (COL6A5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
chx04147
]
102178669 (COL6A5)
00536 Glycosaminoglycan binding proteins [BR:
chx00536
]
102178669 (COL6A5)
Exosome [BR:
chx04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102178669 (COL6A5)
Glycosaminoglycan binding proteins [BR:
chx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102178669 (COL6A5)
Hyaluronan
Extracellular matrix or blood plasma proteins
102178669 (COL6A5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Radical_SAM
VWA_CoxE
Copine
Motif
Other DBs
NCBI-GeneID:
102178669
NCBI-ProteinID:
XP_017908421
EnsemblRapid:
ENSCHIG00000010899
LinkDB
All DBs
Position
1:complement(151692840..151856776)
Genome browser
AA seq
2606 aa
AA seq
DB search
MKILLIIFVPLFWTKTLSYQSPGPGPEYADVVFLVDSSDHLGIKSFPFVKAFINKMISSL
PIEADKYHVGLAQYSDGLHREFLLSTFKSRGPMLNHLKKNYGFLGGSLRIGKALQEVHRA
YFSSGRDRKQFPPILVVLASAESEDAVEEAAAALRKDGVRIVSVGMQGASEKTLKAMATG
QFHYSLRTVRDLSTFSQNMMQILKDAAQYKDGAAHSDIEVPFPRACKKDSIADLMFLVDE
AVGTTENLRLLQNFLKNITSSMDVQDNCLRLGLMSYSDRVKTFSLLSSSTTQSEFQQQIQ
KLSLRAGRSIAGAAIEQLRREGFSASHGSRRAQGVPQIAVLVTDRPSDDSVREVALDLRL
QDVTVLAVGIEGANKTQLEEIVSYPPQQTISMLRSYADLDNYSKKFLKKLQNEIWSQIST
RAEQMELDKTGCLDTKEADLYFLIDGSSSIQKKHFEQIKEFMLAVIRMFSIGPDKVRVGA
VQYSHKKKVEFDINDYLNDMKLRKAVFNIKQLKGSTLTGAALDFMLPLVRKGRKQRTNEA
PCHLIVLTDGMSGDAVLEPAERLRAENITIHAIGIGKANRTQLQQIAREEERVSFGQNFD
SLKSIKNEVVHSICTEKGCESMKADIMFLVDSSGSIGPENFEKMKTFMKNLLDKIQIGGD
RSRVGVVQFSDYSKEEFQLDKYFTQKEISDAIDSMTPISQGTLTGSAITFVDPYFTESKG
GRPVVKKFLILITDGEAQDDVRDPAKALRDKGVVIFSVGVYGANRTQLEEISGDGSLIFH
VENFDDLKAIESKLIFRVCALHDCKRIQQLDVVFVLDHSGSINAEDQENMINLTIHLVKK
SDVGLDRVRFGALRYSDDPEVLFYLNKYSSGPAIVEHLRRRRDTAGRTYTAKALERANDL
FTEEHGSRIKQNVRQMLIVITDGVSHDRNKLGEAASKLRNKGVIIYAVGVGAADQVELET
MAGDKNYTIHVSGFDKLKDIYLPLQDSMCNNSQEVCNIPEADVIFFCDGSDFVSDSDFVT
MTTFLSDLIDNFDIPSQRMKIGMAQFGSRYQEIIELQNSLTKTEWKSRIQAITKSKGRPR
IDLALRQVSVMFEPSAGGRKNAGVPQTLVVITSGAPRYDVSKAVEALREAGICILALGIG
DVYKEQLLPITGSSEKIITFQDFDKLKNVDVKKRMVREICKSCGKTNCFLDIVVGFDIST
HLPGQPLFHGHPRLESYLPGILEDITSIRGVSCGAGAEVQVSMAFKVNSGQNAPAKFQIY
QQTIFDSLLQVTVNGPTHLNAQFLQSMWDTFENVSTSQGQVLLIFSDGLGGESKMMLEDQ
SDRLREAGLDALLVVSLNATAHDEFSSFEFGKGFDYRTHLTIGMKELGSMLSQYLGNIAE
RTCCCKFCKCAGIPGPQGIRGPQASQGFPGMKGSRGHRGEEGEPGTRGEIGPQGSRGGAG
CPGQQGQKGARGFSGYKGEHGEDGVDGLDGEEGFHGLPGKKGEKGDAGSQGSPGSRGPPG
GYGEKGFPGDPGNPGQSNNIKGQKGSKGEQGRQGRTGQKGTQGSPSSRGSRGREGQRGVQ
GALGEPGMPGPQGASGAEGLQGSQGASGPPGRKGEKGNEGHKGPQGAPGPAGDKGSVGRP
GLLGKKGEPGIPGDPGPVGQVGRRGKQGDYGIPGYGPVGRKGVKGPRGFPGDMGQKGDAG
DPGIPGGPGPKGFRGLTLTVGLKGEAGSPGRPGPPGRRGPKGMAGQPVHSQCDLIQFMRD
HSPCWEEKCPVYPTELVFALDQSNDITEQRFNEMRDIITSVVGDLHIRESNCPVGARVVV
LSYSSGTSYLIRGSDYRSKKQLLQLLSQIKYQNSGEVRDIGNAMRFVARNIFKRTSAGVN
VQRVAVFFSNGQAASRSSVITATMEFSALDISPAVFAYNEKVYLDEAFGFDNTGTFQVLS
VPPNGEYAPLERLQRCTLCYDKCFPNTCKKEIVLPENSYMDVAFLLDNSRNIASDEFKDV
KALVGSMLDNFDIASDPMVSDSGDRIALLSYSPWDRREKNVVKTEFEFTTYNSQALMKRH
IETNLQQLNGEATIGHALLWAVENLFPATPKLRKYRVIFVVSAGENRERKEFLKKMALRA
KCQGYVIFVISLGLTPEEDMKELASHPLDHHLIQLGRIHKPNLDYVVKFLKPFVYSVRRG
FNQYPPPVLENICKLIDSEDEENQSISLPFTPAAYDISSGENIIGQELSAQRDSSLVLED
NGSSHLVYIPSQMLMPQKSMTKYEKDWDSEAIASLTSGHENLGRKEEPGLTYESRDASLQ
EYYMDVTFLIDASKRIGSDEFKEVKAFITSVLDYFHLAPDPLTSTLGDRIAVLTYSPPGY
MPDTENCPVHLEFDLVTYNDMHQMKRHLQDSLQQLNGDVFIGHALQWTLDNVFVGTPNLR
KNKVIFVISAGETNPLDKEVLRNVSLRAKCQGYSIFVFSFGPLHNDKELEELASHPLDHH
LVQLGRIHKPDLNYIIKFVKPFVHSIRRAINKYPPADMKPKCVNITSPTPENNGIGNTVF
LLPEVYEIEMESSELSGEPDSQQQHFFDLGNSHSHSSGITTDLIQRLYMLFSSGELMRED
KKEAHSEEITSPANDRQDEKDGEDTR
NT seq
7821 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcctgctaattatatttgttcctctcttctggacgaaaacactgtcatatcag
agcccagggccaggccctgagtatgctgatgtggtgtttctggtggacagctccgaccac
ctgggaattaagtccttcccgtttgtgaaggcctttatcaacaagatgatcagcagcctc
cccatagaggctgacaagtaccacgtgggcctggcccagtacagcgatgggctccacaga
gagttcctgctcagcaccttcaagagcaggggccccatgctgaaccacctcaagaagaac
tacgggttcctggggggctccctgcggattgggaaggctctccaggaggtgcacagggcc
tacttctcaagcgggagggacaggaaacagtttcccccgatcctggtggtcctggcttcc
gccgagtccgaagatgctgtggaagaggccgccgcagcgctccgcaaagatggggtgagg
atcgtctcagtggggatgcagggggcatccgagaagaccctgaaggccatggccacgggc
cagttccactacagcctccggacggtcagggacctcagcacattctcccagaacatgatg
cagattctcaaggatgcagctcagtacaaagatggagcagcccactctgatatagaagtc
ccctttcccagggcttgtaagaaagattcgattgccgacctcatgtttctggtggatgag
gccgttgggaccacagagaatctaaggctcctgcagaacttcctgaagaacatcacctcc
tccatggatgtgcaagacaactgcctgcggcttggacttatgagttacagtgacagagtc
aagacattttctcttctgagctcgagcacaacccagtctgaatttcagcagcaaatccag
aagctttctctgcgggctgggagatccattgctggagctgccattgagcagctgaggagg
gaaggcttttcggcatcacatggcagcaggcgggcgcaaggagtgccccaaatagcagtc
ctggttactgacaggccatcggacgacagcgtgcgtgaggtggccctcgacctccggctg
caggatgtaaccgtgcttgccgtgggtattgaaggggccaacaagacccagttggaagaa
atagtgtcttaccctccacagcagaccatctccatgctgcggtcctatgcagacttggat
aattacagtaagaagttcttaaaaaagctccaaaatgaaatatggtcccaaatctcgact
cgtgctgaacaaatggaacttgataaaactggctgtctggacacaaaagaggctgatctc
tatttcctcatcgatggctcaagcagcattcagaaaaaacactttgagcaaatcaaggaa
ttcatgttggcggtgataaggatgtttagcattggtccagacaaagttcgagtcggagct
gtgcagtattcccataagaagaaagtggaatttgatatcaatgactaccttaatgatatg
aaattaagaaaggctgtttttaacatcaagcaacttaagggcagcactctaactggggca
gccctggatttcatgctgccactggtgaggaagggaaggaagcagaggacgaatgaggca
ccatgccacctcattgtcttgaccgatgggatgtctggagatgctgtcctggaacccgct
gagagactaagggctgaaaatatcaccatccatgcgattggtatcgggaaggctaacaga
acacagctgcaacaaattgctcgggaagaggaaagggttagctttgggcagaactttgat
tctttaaaaagcatcaagaatgaagttgttcacagtatctgcactgagaaaggatgtgaa
agcatgaaggctgacatcatgtttctggtggacagttctggcagtataggacctgaaaat
tttgagaaaatgaaaactttcatgaaaaacctgttagataagattcagattggtggagac
agaagccgagttggtgtagtccaattcagtgattatagtaaggaagaattccagcttgac
aaatactttacacaaaaagaaatttctgatgcaatagacagcatgacccccatcagtcag
ggaactttgactggaagtgcgataacctttgtggatccatacttcaccgagtccaagggg
ggccgcccagtggtgaaaaagtttctcatccttatcactgatggagaagcccaggatgat
gtgagagaccccgcaaaagctcttcgggacaaaggtgtggtcatcttctccgtgggggtg
tacggggccaacaggacgcagctagaggagatcagtggggacggcagcctgatcttccac
gtcgagaacttcgatgatctaaaggcaatagagagtaaactcatcttccgcgtgtgtgct
cttcatgattgtaaacggattcagcagttagatgtcgtgttcgtgctggaccactcaggc
agcatcaacgccgaggaccaagaaaacatgatcaacctcaccatccatttggtgaagaaa
tcagacgtgggcctggaccgcgttcggttcggagcgctcagatactcagatgaccccgag
gttcttttctacctcaacaagtactcgagtggaccagccatcgtcgagcatctgaggagg
cgcagggatacggcgggaaggacctacaccgccaaggctctggagcgtgcgaacgacctg
ttcacagaggagcacggcagccgtatcaagcaaaacgtgaggcagatgctgatcgttatc
acggatggggtgtctcacgacagaaacaagctcggtgaggcggcctcaaaattaagaaac
aaaggcgtcatcatttacgcagtgggcgtaggtgcggctgaccaagtggaactggagacc
atggcaggggataaaaactacaccatccacgtcagcggttttgacaaactgaaagatatt
tacctgcctctgcaagacagtatgtgtaacaactcgcaagaggtctgtaacattccagaa
gctgatgtgattttcttttgtgatggctctgacttcgtatctgattcagactttgttacc
atgacaactttcttgtcggacttaatcgataattttgacattccgtctcagaggatgaaa
attgggatggcccaatttgggagccgctaccaagaaattatcgagttacagaactctctg
actaaaaccgaatggaagtctcggattcaagctatcaccaagagcaagggccgtccgcgg
atagacttggccctgagacaagtgagcgttatgtttgagccgtccgctggtggcaggaag
aacgctggtgtccctcagactctggtggtcatcacatctggggctccccgctatgatgta
tcaaaggcagtggaggccctgagggaagctggcatttgcatcctggctctgggcatagga
gatgtttacaaggaacagctcctgccgataacgggcagttctgaaaaaatcatcactttt
caagactttgataaattaaagaatgtggatgtgaaaaaaagaatggtccgtgaaatctgc
aagagctgcgggaaaaccaactgctttctggacattgtggttggcttcgacatttccact
cacttgccgggccagccactgttccacggccacccccggctggaatcatacctcccgggc
atcttagaggacatcacctccatcaggggtgtcagctgcggggcaggtgcagaggtgcag
gtgagcatggcctttaaggtgaacagtggccagaatgcccctgccaagttccaaatctac
cagcaaacaatatttgacagcctcctgcaagtcaccgtcaacgggccgactcacctgaat
gcgcagttcctgcagtccatgtgggacacgtttgagaatgtgtccacatcccaaggacag
gtgttgctcatcttttcagatggtcttgggggtgaaagcaaaatgatgcttgaagatcaa
tcggacaggctcagggaagcaggacttgatgctttgctggtagtgtccttaaatgcaacc
gctcatgacgagttttccagctttgaatttggaaaaggatttgactacaggactcacctg
accattggaatgaaggaactgggcagtatgctatcacagtatctggggaacattgcagag
aggacgtgttgctgcaagttttgcaaatgcgcagggattccaggacctcaggggatccga
gggccccaagcctcccagggctttccaggtatgaaaggcagcagaggacacaggggagag
gagggagagcctggaactcgaggagaaattggacctcaaggaagcagagggggtgcagga
tgcccagggcagcagggtcagaagggagccagaggattttctggatataagggagaacac
ggagaggatggggtcgatggactggatggggaagagggctttcatggacttcctgggaag
aagggagaaaaaggtgatgcaggttcccagggaagcccaggttccagaggtccccctggg
ggatatggagagaagggtttcccaggggatcctggtaatccaggacaaagcaacaacatc
aaaggacaaaagggctccaaaggagagcaaggaagacagggtagaaccgggcagaaaggg
acgcaaggcagtcctagctccagagggagcagggggagagaaggccaaaggggagtccag
ggtgccttgggggaaccgggcatgcctggacctcaaggcgcatcaggagctgaaggactt
caaggctcacagggagcaagcggacctccaggcaggaaaggagagaaggggaacgaggga
cacaaaggacctcagggtgctcctggaccagcaggagataaagggagtgttggaaggcct
ggtcttttggggaaaaagggagaacctgggattcctggagatccagggccagtggggcaa
gtgggacggcgaggaaagcagggtgactatggcatcccaggctacggtcctgtgggacga
aaaggagtcaagggtccacgaggattccctggagatatgggccaaaagggtgatgctggt
gatcctggaattcctggggggcctggacccaaaggatttagaggattaacactcacggta
ggcctgaaaggtgaagcaggctctcctggacgcccaggcccccctggacggagaggccct
aaagggatggcagggcagcccgtccattctcaatgtgatctaatccagttcatgcgggac
catagtccttgttgggaagaaaagtgtcctgtgtatccaacagagctggtatttgccctg
gaccagtccaatgatatcacagagcagagatttaatgaaatgagggacatcatcacttct
gttgtcggcgaccttcacatcagggaaagtaattgccccgtgggagcaagagttgttgtg
ctttcctacagctcgggcaccagctacctcatccgtgggtctgactaccgtagcaagaag
cagcttcttcagcttctctcccaaataaaatatcaaaactctggggaagtccgagacatt
gggaatgcgatgaggtttgtggctcggaacatctttaagcggacgtctgcaggagtcaat
gtgcagagagttgctgtgttttttagcaacggacaagctgcaagtaggtcatccgtcatc
acggccaccatggagtttagcgccttggatatcagccccgcagtctttgcttataatgaa
aaggtctacctcgatgaggcttttgggtttgacaacacaggaacatttcaggtgctttct
gttcctccaaatggggaatatgctccattagaaaggcttcagcgctgtacactttgctat
gataaatgttttccaaatacttgcaagaaagaaatcgtcttacctgaaaattcgtacatg
gatgtcgccttcctcttagacaattccagaaatatagcaagtgatgagtttaaggatgtg
aaagccttggtgggctcaatgcttgataactttgacattgcctctgatcctatggtctca
gactctggtgataggattgccttgctgagctattctccttgggataggagagagaagaat
gtggtaaaaacagagtttgagtttacaacttataacagtcaagctctgatgaaaaggcac
attgagactaacctccagcagctaaatggggaagccaccattggccatgccctactgtgg
gccgtggagaatctcttcccagcaacgcccaagctaagaaaatacagggtcatctttgtg
gtctccgctggagagaatcgtgagagaaaggaattcttgaagaagatggctctgagggcc
aagtgtcaaggctatgtcatatttgtgatttccctgggtttgacacccgaggaggacatg
aaggagctggccagtcacccgcttgatcaccatctgatacagctggggagaattcataaa
ccaaatctggattatgttgtgaagtttttaaagccatttgtgtactcagtgagacgagga
ttcaatcagtacccaccaccagtgcttgagaacatctgcaaactcattgattcagaagat
gaggaaaatcaaagcatcagtctcccatttactcctgcagcttatgatatttcttcagga
gagaacatcattggccaggaattgagtgctcagagagattcatctttggtattggaggac
aacggaagcagccatttggtttacattccaagccagatgcttatgccacagaaatcaatg
actaagtatgaaaaagattgggattctgaagcaattgcaagtctcacctctggacatgaa
aaccttggcagaaaagaagaaccaggtcttacttatgaaagtagagatgcctctcttcaa
gaatattacatggatgtgacttttctcatagatgcttccaaaagaataggaagtgatgag
tttaaggaagtgaaagcttttataacctcagtgcttgattattttcatctggccccagat
ccgctgacctccaccttaggggacagaatagcagtcctgacctactctcctccaggctat
atgcccgacacagaaaactgccctgtccacctagaatttgatttggtcacttacaacgat
atgcaccaaatgaagcgtcatctccaagactcccttcagcagctcaatggagatgttttt
ataggccatgccctccagtggacacttgacaatgtctttgtaggaactcccaacctgagg
aaaaacaaagttatctttgttatatctgctggtgaaaccaaccctttagacaaggaagtc
ttaagaaatgtatctctgagagccaagtgtcagggctactccatatttgtgttttctttt
ggtcctctacacaatgacaaggaattagaagaactagccagccacccactggatcatcac
ttagtccagcttggccgaatccacaagccagatttgaactatatcatcaaatttgtcaag
ccatttgttcattcaatcagacgtgccatcaacaaatatccccctgcagacatgaaaccc
aaatgtgttaacatcacctctcccactccagagaataatggcataggaaacactgtattc
cttcttcctgaggtatatgaaattgagatggagagcagtgagctctcgggtgaacccgat
tcccagcagcagcatttctttgacttagggaacagtcatagtcacagttctgggatcacc
actgatttgatccagaggttatacatgctcttttcatctggggaactgatgagggaagac
aagaaagaggcacattcagaagaaattacatctccagcaaatgacagacaagatgaaaaa
gatggtgaagacacaagatga
DBGET
integrated database retrieval system
