Capra hircus (goat): 102179875
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Entry
102179875 CDS
T02910
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
chx
Capra hircus (goat)
Pathway
chx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102179875 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chx03019
]
102179875 (EDC4)
Messenger RNA biogenesis [BR:
chx03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102179875 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
102179875 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
DUF445
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_HPS5
WDR55
Motif
Other DBs
NCBI-GeneID:
102179875
NCBI-ProteinID:
XP_017917660
LinkDB
All DBs
Position
18:36635228..36646387
Genome browser
AA seq
1403 aa
AA seq
DB search
MASSCASIDIEDATQHLRDILKLDRPAGGPSAENQRPSNAYNGDLNGLLVPDPLCSGDSA
STNKPGLRAMPPINLQEKQVICLLGDDSSTGIGILAKEVEIVASSDSSISSKARGSNKVK
IQPVAKYDWEQKYYYGNLIAVSNSFLAYAIRAANNGSAMVRVISVSTSERTLLKGFTGSV
ADLAFAHLNSPQLACLDEAGNLFVWRLALINGKIQEEILVHIRQPEGTPLNHFRRIIWCP
FIPEESEDCCEEGSPTVALLHEDRAEVWDLDMLRTNHSTWPVDVSQIKQGFIVVKGHSTC
LSEGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKK
QDPEVPFWRFLITGADQNRELKMWCTVSWTCLQTIRFSPDIFSPVSVPPSLKVCLDLSAE
YLILSDVQRKVLYVMELLQNQEEGRACFSSISEFLLTHPVLSFGIQVVSRCRLRHTEVLP
AEEENDSLGADGTHGAGAMESSAGVLIKLFCVHTKALQDVQIRFQPQLNPDVVAPLPSHP
AHEDFAFPTAFGESRPELGSEGLGSAAHGSQPDLRRIVELPAPADFLSLSSETKPKLMTP
DAFMTPSTSLQQIAASPSSSSSSSSSSSSSSSLTAVSAMSSTSAVDPALPRPPEELTLSP
KLQLDGGLTMSSSSLQASPRGLLPGLLPGPADKLTPKGPGQVPTAASALALELQEVEPLG
LPQASPSRTRSPDVISSASTALSQDIPEIASEALSRGFGASAPEGLEPDSMASAASALHL
LSPRPRPGPELGPQLSLDGGPGDGDRHSTPSLLEAALTQEATAPDSQVWPTAPDITRETC
SSLAESPRNGLQEKHKSLAFHRPPYHLLQQHDSQDASAEQSDHDDEVASLASAAGNFGTK
VPTPRLPAKDWKTKGSPRASPKLKRKGKKDDGDSSLGSRLTEHQVAETPEDWPALIWQQQ
RELAQLRHSQEELLQRLCAQLEGLQSTVTGHVERALESRHEQEQRRLERALAEGQQRGGQ
LQEQLTQQLSQALSSAVAGRLERSIRDEIKKTVPPCVSRSLEPVAGQLSNSVATKLTAVE
SSMKENISKLLKSKNLTDAIARAAADTLQGPMQAAYREAFQSVVLPAFEKSCQAMFQQIN
DSFRLGTQEYLQQLENHMKSRKAREQEAREPVLAQLRGLVSTLQGATEQMAATVSGSVRA
EVQHQLHVAVGSLQEAILAQVQRIVKGEVSVALKEQQAAVTSSIMQAMRSAAGTPVPAAH
LDCQAQQAHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDPGQVFGQPPCPLSQPVL
LSLIQQLASDLGTRTDLKLSYLEEAVMHLDHSDPITRDHMGSVMAQVRQKLFQFLQAEPH
NSLGKAARRLSLMLHGLMTPSLP
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctcttgcgcgagcatcgacatcgaggacgccacgcagcacctgcgggacatc
ctcaagctggaccggccggcgggaggccccagtgcagagaaccagcgaccatctaatgcc
tacaatggagatctcaatgggctcctggtcccagaccccctctgctcaggtgacagtgct
tcaacaaacaagcctggtctccgagccatgccacctattaacctgcaggaaaagcaggtc
atctgcctcttaggagacgacagttccactggcattggaattttggccaaggaggtggag
attgtggccagcagtgactctagcatctcgagcaaggcacgggggagcaacaaggtgaaa
attcagcctgtcgccaagtatgactgggagcagaaatactactatggcaacttgattgct
gtgtccaactctttcttggcctatgctattcgggctgccaacaacggctcagcaatggtg
cgagtgatcagtgtcagcacttcagagcggaccctgctcaaaggcttcacaggcagcgtg
gctgatctggcctttgcacatctcaattccccacagctggcctgcctggatgaggcaggc
aacctgtttgtatggcgcttagccctgattaatggcaaaattcaagaggagatcttggtc
cacatccgccagccagagggcactccactgaaccacttccggaggatcatctggtgcccc
ttcatccccgaagagagtgaagactgctgtgaggagggcagcccaacggtggccctgttg
catgaggaccgggctgaggtgtgggacctggacatgctccgcaccaaccacagcacctgg
cccgtggatgtcagccagatcaagcagggcttcatcgtggtaaaaggccacagcacatgc
ttgagtgaaggggccctctcacctgatgggactgtcctggctaccgcaagtcatgatggc
ttcgtcaagttctggcagatctacattgagggacaagatgagccacggtgtttacatgag
tggaagcctcatgatgggcggcccctctcctgcctcctgttctgtgacaaccacaagaaa
caggatcctgaggtccccttctggagattcctcattactggcgctgaccagaatcgggag
ctgaagatgtggtgcacagtgtcctggacctgcctgcagaccattcgcttctccccagat
atcttcagcccagtgagtgtgccccccagcctcaaggtttgcctggacctctcagcagaa
tacctgatcctcagtgatgtacagcggaaggtcctctacgtgatggaactgctgcagaac
caggaggagggacgggcctgcttcagctcgatctctgagttccttctcacccaccctgta
ctgagtttcggtatccaggttgtgagtcgctgccggctgcggcacacagaggtgctgcct
gctgaggaggagaatgacagccttggggccgacgggacccacggagcaggtgcgatggag
tcttcagctggtgtgctcatcaagctcttttgtgtgcacactaaggcattacaggatgtc
cagatccgctttcagccacagctgaaccctgacgttgtggccccgctcccctcgcaccct
gcccatgaagactttgccttccccacagcatttggagagtctcggccggagctgggctca
gagggcctgggatcggctgctcatggctcccagcctgacctccgacgtatcgtggagttg
cctgcaccggctgacttcctcagtctgagcagtgagaccaagcccaagctgatgacacct
gacgccttcatgacgcctagcacctccctgcagcagatcgctgcatctcccagtagcagc
agcagcagcagcagtagcagcagcagcagctcctctctcacagccgtgtctgctatgagc
agtacttcggccgtggaccccgccttgcccaggccacctgaggagctgaccttgagcccc
aagctacagctggatggcgggctgaccatgagcagcagcagcctgcaggcaagcccacgt
gggctcctgcccggcctgctcccaggtccggccgacaaactgactcccaaaggacctggt
caggtgcctactgctgcctctgcactcgccctggagctgcaagaagtggaacccctgggg
ctgcctcaggcttcccccagccgcacccgctcccctgatgttatctcctcagcctccact
gccttgtcccaggacatccctgagatcgcatctgaggcgctgtcccgtggctttggcgcc
tccgctcctgagggcctggagccagacagcatggcctcagcggcctcggcgctccacctg
ttgtctccacggccccggccagggcccgagctcggcccccagcttagcctggatgggggc
cctggggatggggatcggcatagtaccccttccctcctggaggcagccttgacccaggag
gccacagcccctgacagtcaggtctggcctacagctccagacatcactcgcgagacctgc
agcagcctggcagagagcccccggaatggcctccaggaaaagcacaagagcctggctttc
caccgaccaccttatcacttgctgcagcagcacgacagccaggacgccagcgctgagcaa
agtgaccatgatgatgaggtggccagccttgcctctgctgcagggaactttggcaccaaa
gtgcccactccacgtcttccagccaaggactggaagaccaagggatcccctcgggcctca
cccaagctcaagagaaagggcaaaaaggatgacggggattcatccttgggatcccggctc
acagagcaccaggtggcagaaacccctgaggactggccggcactgatctggcagcagcag
agagagctggcacagctgcggcacagccaagaagagctgctgcagcgcctgtgtgcccag
cttgaaggcctgcagagcactgtcactggccacgtggagcgagccctggagtcgaggcac
gagcaggagcagcggcgactggagcgggccctggccgaggggcagcagcgaggtgggcag
ctgcaggagcagctgacgcagcagctatcccaggcgctgtcttcagcggtggcagggcga
ctggagcgcagcatacgagacgagatcaagaagacggttcctccatgtgtctcccggagt
ctggagcctgtggctggccagctcagcaactcggtggccaccaaactcacagctgtggag
agtagcatgaaagagaacatctctaagctgctcaagtccaagaacttgacagatgccatt
gcccgagcagccgcagacacattacaggggccaatgcaggctgcctaccgggaagccttc
cagagcgtggtcctgcccgccttcgagaagagctgccaggccatgttccagcagatcaat
gacagcttccgactgggcacacaggagtacttgcagcagttggagaaccacatgaagagc
cgcaaggcacgagagcaggaggcacgggagcccgtgctggcccagctgcggggcctggtc
agcaccctgcagggggccacggagcagatggcggccactgtgtctggcagcgttcgggct
gaggtgcagcaccagctgcacgtggccgtaggcagcctgcaggaggcgattctagcacag
gtacagcgcatcgtgaagggcgaagtgagtgtggctctcaaggagcagcaggccgccgtc
acctctagcatcatgcaggccatgcgctcagctgccggcacacctgtgcccgctgcccac
ctcgactgccaagcccagcaagcccatatcctgcagctgctacagcagggccacctcaat
caggccttccagcaggccctgacagctgccgacctgaacctggtgctatacgtgtgtgaa
acagtggacccaggccaggtttttgggcagccaccttgccccctctcccagcctgtactc
ctttctctcatccagcaactggcctctgatcttggcactcgaactgacctcaagctcagc
tacctggaagaggctgtaatgcacctggaccacagtgaccccatcactcgggaccacatg
ggctccgtcatggctcaggtgcgccagaagctcttccagttcctgcaggcggagccacac
aactcacttggcaaagcagcccggcgtctcagcctcatgctgcacggccttatgaccccc
agcctcccttag
DBGET
integrated database retrieval system
