Capra hircus (goat): 102181358
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Entry
102181358 CDS
T02910
Symbol
VPS50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
chx
Capra hircus (goat)
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
chx04131
]
102181358 (VPS50)
Membrane trafficking [BR:
chx04131
]
Protein recycling
Others
EARP complex
102181358 (VPS50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
SAC9_GBDL_2nd
Motif
Other DBs
NCBI-GeneID:
102181358
NCBI-ProteinID:
XP_005678979
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All DBs
Position
4:complement(109884545..110024359)
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AA seq
964 aa
AA seq
DB search
MQKIKSLMTRQGLKSPPESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
YFSTESFDIVKYELEKLPPVLNLQELEEYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWGVMLSYYRTMEWHEKHDGEDAASASEG
SNMMGAEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIIS
RLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSI
LQLHEFKFMEQSRSPSVSPSKQSSATSSKTVTLFEQYCSGGNPFEIQADHKDEETEDVLA
SNGYESDEQEKSAYQEYDSDSDVPEELKRDFVDEQTGDAPVKSVSRETLKSRKKSDYSLN
KVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSL
ESTGLGLSSSRLRTTLNRIQESLIDLEVSADSAATLTAAEERKEKVPSPHLSHLVVLTSG
DTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPI
YWIVAGKAIDYEQMLLLMANVKWDVKEIMSQHNIYVDTLLKEFEQFNMRLNEVSKRVRIP
LPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDK
EFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLSAIDDID
RPKR
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaatcaaatctcttatgacccggcagggtctgaaaagtcctccagagagcctc
agtgatcttggtgccattgagagtctccgggtccctggaaaggaggaattccgagaactt
cgagaacaacctagtgaccctcaagctgaacaagaactaattaatagcattgaacaagtg
tatttttctacagagtcatttgatattgttaaatatgaactggagaagctccctcctgtt
ctcaatttgcaagaattagaggagtacagagacaaattgaaacaacagcaagctgcagtc
tctaaaaaagtagcagatttaatccttgaaaaacagcctgcttatgtcaaggaacttgaa
agagttacttcattacaaacaggtcttcagttagctgctgttatctgcaccaatgggagg
agacacttgaatattgcaaaggaaggttttactcaagctagtttaggcctccttgcaaat
cagaggaaacgtcagttgctgattggacttctgaaatctctgagaacgataaaaacattg
caaagaacagatgtccgcttaagtgaaatgctggaggaggaagactatccaggagctatt
cagctgtgcctggaatgtcagaaagctgccagcacttttaaacattacagttgcataagt
gaactgaattcaaagttgcaagatactttagaacaaattgaggaacagttggatgttgct
ctgtccaaaatatgcaagaattttgacattaaccactacaccaaagttcaacaagcttat
cgacttcttggaaaaacacagaccgcaatggatcaacttcatatgcacttcacccaagcc
attcataacaccgtgtttcaggttgttcttggctatgtggaactgtgtgcaggaaacaca
gatacaaaattccaaaagctgcaatataaggatctctgtacgcatgttacaccagacagc
tacattccatgcctcgctgacctgtgcaaagcactgtggggagtgatgctcagctattac
aggactatggaatggcatgagaagcacgacggtgaggatgctgcttctgcttctgaaggg
agtaatatgatgggtgccgaagagacaaattttgatcgtggctacataaaaaagaaatta
gaacatggacttacacgaatatggcaggatgttcagctaaaagttaaaacctacttgctc
ggaactgatttgtctatattcaaatatgatgatttcatctttgttttggatataatcagc
aggttgatgcaagttggagaagaattttgtggtagcaagtctgaagttttgcaagaatct
attagaaaacaaagtgtcaattattttaagaactaccatagaacaaggcttgatgaactg
agaatgtttctagagaatgagacctgggaactttgtcctgtgaagtcaaatttcagcatc
ttgcagcttcatgaatttaaattcatggaacagtctcgttctccatcagtttcacccagt
aagcagtcatctgcaacttcctcaaagacagtaaccttgtttgagcagtactgcagtggt
gggaatccatttgaaattcaggccgaccacaaagatgaagaaacagaagatgtcttggct
tctaatgggtatgaatctgatgaacaagaaaaaagtgcctaccaggaatatgacagtgac
agtgatgttcctgaggaactaaaacgagattttgttgatgagcagacaggcgatgctcct
gtgaaaagtgtttctcgagagaccctaaaaagcaggaagaaatcagactacagtctaaat
aaagtgaatgcacccatcttaacaaatacaacattgaatgtaataaggcttgttggtaaa
tatatgcagatgatgaacattcttaagccaattgcatttgatgttatccattttatgtct
cagctctttgattattacttgtatgcaatatataccttttttggtcggaatgattcattg
gaatcaacaggactaggtcttagtagtagtcgactaagaacaactctaaacaggatacaa
gaaagcctcattgatctggaggtttcggctgattccgctgccacactcacagcagcagaa
gagaggaaggagaaggtgccgagtcctcacctgagtcacctagtggtgttgacctctggg
gacacactgtatgggttggcagaaagagtggtcgccacagaatccttggtattcttggct
gagcagtttgagttccttcagcctcatctggatgctgtgatgcctgcagtcaaaaaacca
tttcttcagcagttttattctcagacggtctcaacggccagtgaactacgcaaaccaatt
tactggattgtagctggtaaagccattgattatgaacagatgctgctgctaatggctaat
gtgaaatgggatgtaaaagaaattatgtcacagcacaacatatatgtagatacactgttg
aaggaatttgagcagtttaacatgcggttaaatgaagtttctaagagagttcggataccc
ttgcccgtgtctaatatactttgggaacattgtatacgcctggctaatagaactattgtg
gaaggatacgccaacgtcaagaagtgtagcaatgagggtcgtgccttgatgcaattggat
tttcaacagtttttaatgaaacttgaaaagctaactgatatcagacccattccagataaa
gaatttgtggaaacctatattaaagcatactacctaaccgagaatgacatggaacgctgg
atcaaagagcacagggagtattcaacgaagcagctgaccaacctggtaaatgtttgcctg
ggatcccatatcaataagaaagcaaggcaaaaacttctctcagctatagatgatatagac
agacccaaaagataa
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