KEGG   Capra hircus (goat): 102183242
Entry
102183242         CDS       T02910                                 
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17
  KO
K12816  pre-mRNA-processing factor 17
Organism
chx  Capra hircus (goat)
Pathway
chx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:chx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102183242 (CDC40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:chx03041]
    102183242 (CDC40)
Spliceosome [BR:chx03041]
 Complex C
  Other components
   Step II factors
    102183242 (CDC40)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_WDR3_2nd WDR55 EIF3I WD40_WDHD1_1st WD40_Gbeta WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EIPR1 DSE1_N WD40_RFWD3 Beta-prop_TEP1_C Beta-prop_RIG_2nd ANAPC4_WD40 ASA1 Beta-prop_DCAF4 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_WDR41 PAC11 WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_NOL10_N Beta-prop_SCAP TRM82_WD CFAP251_N Beta-prop_ACSF4 UCP007778 Beta-prop_NWD2_C WD_LRWD1 WDR54 Beta-prop_Vps41 YJR039W_M PQQ_2
Other DBs
NCBI-GeneID: 102183242
NCBI-ProteinID: XP_005684632
LinkDB
Position
9:complement(27295294..27342138)
AA seq 607 aa
MSITAICQDLKLLLLPPGPGLHRLSVAVMSAAIAALAASYGSGSGSESDSDSEGGRCSLP
AADSLMHLTKSSSDKPSLAVAVDSAPEVAVKEDLETGVHLDPAVKEVQYNPTYETMFAPE
FGPENPFRTQQMAAPRNMLSGYAEPAHINDFMFEQQRRTFATYGYALDPSLDNHQVSTKY
IGSVEEAEKNQGLTVFETGQKKIEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSEEE
QKELDEITAKRQKKGKQEEEKPGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSTVPPE
KCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHS
KAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFV
AGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVD
FKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYAC
QVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWD
GLIKLWD
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgtctattactgcaatctgtcaggacctaaagctgctccttcttccgccagggcctggt
cttcacagattgtctgttgccgtcatgtcggctgcgattgcagctctcgctgcttcttat
ggttcgggttcagggtccgaatcggactcggacagtgagggcgggcggtgttccttgccc
gccgcggattccctcatgcacttaactaaatcgtcttcggataagccctctctggcagtg
gcagtggactccgctccggaggtggcagttaaggaagatttggagactggagttcacctt
gaccctgctgtcaaagaggttcagtataatcccacctatgagaccatgtttgctcctgag
tttggaccagaaaatcccttcagaacccagcaaatggctgcccctagaaatatgctttct
ggatatgctgaaccagctcatatcaatgattttatgtttgaacagcaaagaagaactttt
gccacttatggttatgcattggacccttcattagataatcatcaagtgtctactaagtat
attggttctgtagaagaagctgaaaaaaaccaaggtttaactgtgtttgaaactggtcag
aagaaaatagaaaagaggaaaaaatttaaagaaaatgatgcatctaatattgatggtttc
ttgggaccatgggcaaaatatgtggatgaaaaagacgtagccaaaccttcagaagaagaa
caaaaagaattggatgaaattacagcaaagaggcagaagaaaggcaaacaggaagaagag
aaacctggagaggaaaagacaatcttacatgttaaagaaatgtatgactatcaaggcagg
tcctatcttcacatacctcaggatgttggtgttaatctgcggtcaactgtgccacctgag
aaatgttatcttcccaaaaaacaaattcatgtgtggtctggacacacaaagggcgtcagt
gcagtcagattgtttccactctctggccatttgttgctgtcttgttccatggactgtaaa
attaagctatgggaggtttatggagacaggcgctgtctgcgaacatttattggtcacagt
aaagctgttagggacatctgctttaatactgcaggaacacagttcctcagtgcagcttat
gacaggtatcttaagctctgggacactgagacaggacagtgtatatcaagatttacaaac
cgaaaagtaccttattgtgtcaaatttaatcctgatgaagataagcaaaatctctttgtg
gctgggatgtctgataagaagattgtgcaatgggacattcgaagtggagaaattgtgcag
gaatatgatcggcatctgggagctgtcaacaccattgtttttgtcgatgagaacaggaga
tttgtaagcacatccgatgataagagcctaagagtttgggaatgggatatccctgtggat
ttcaagtatatagcagaacccagtatgcactcaatgcctgcagtgactttgtctccaaat
gggaaatggctagcgtgccaatcaatggacaaccaaatcttaatttttggagcacagaac
agatttagattgaataagaagaaaatttttaagggccatatggtagcaggctatgcttgt
caagtagacttttcaccagacatgagctatgtgatttcaggagatggaaatggaaagtta
aacatctgggactggaagaccacaaaactctacagtagatttaaagctcacgataaagtg
tgtataggtgcagtatggcatcctcatgaaacatctaaagtcataacttgtggttgggat
ggtctcattaaattgtgggattaa

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