Capra hircus (goat): 102183242
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Entry
102183242 CDS
T02910
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
chx
Capra hircus (goat)
Pathway
chx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102183242 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
chx03041
]
102183242 (CDC40)
Spliceosome [BR:
chx03041
]
Complex C
Other components
Step II factors
102183242 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
WDR54
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
102183242
NCBI-ProteinID:
XP_005684632
LinkDB
All DBs
Position
9:complement(27295294..27342138)
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AA seq
607 aa
AA seq
DB search
MSITAICQDLKLLLLPPGPGLHRLSVAVMSAAIAALAASYGSGSGSESDSDSEGGRCSLP
AADSLMHLTKSSSDKPSLAVAVDSAPEVAVKEDLETGVHLDPAVKEVQYNPTYETMFAPE
FGPENPFRTQQMAAPRNMLSGYAEPAHINDFMFEQQRRTFATYGYALDPSLDNHQVSTKY
IGSVEEAEKNQGLTVFETGQKKIEKRKKFKENDASNIDGFLGPWAKYVDEKDVAKPSEEE
QKELDEITAKRQKKGKQEEEKPGEEKTILHVKEMYDYQGRSYLHIPQDVGVNLRSTVPPE
KCYLPKKQIHVWSGHTKGVSAVRLFPLSGHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHS
KAVRDICFNTAGTQFLSAAYDRYLKLWDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFV
AGMSDKKIVQWDIRSGEIVQEYDRHLGAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVD
FKYIAEPSMHSMPAVTLSPNGKWLACQSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYAC
QVDFSPDMSYVISGDGNGKLNIWDWKTTKLYSRFKAHDKVCIGAVWHPHETSKVITCGWD
GLIKLWD
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtctattactgcaatctgtcaggacctaaagctgctccttcttccgccagggcctggt
cttcacagattgtctgttgccgtcatgtcggctgcgattgcagctctcgctgcttcttat
ggttcgggttcagggtccgaatcggactcggacagtgagggcgggcggtgttccttgccc
gccgcggattccctcatgcacttaactaaatcgtcttcggataagccctctctggcagtg
gcagtggactccgctccggaggtggcagttaaggaagatttggagactggagttcacctt
gaccctgctgtcaaagaggttcagtataatcccacctatgagaccatgtttgctcctgag
tttggaccagaaaatcccttcagaacccagcaaatggctgcccctagaaatatgctttct
ggatatgctgaaccagctcatatcaatgattttatgtttgaacagcaaagaagaactttt
gccacttatggttatgcattggacccttcattagataatcatcaagtgtctactaagtat
attggttctgtagaagaagctgaaaaaaaccaaggtttaactgtgtttgaaactggtcag
aagaaaatagaaaagaggaaaaaatttaaagaaaatgatgcatctaatattgatggtttc
ttgggaccatgggcaaaatatgtggatgaaaaagacgtagccaaaccttcagaagaagaa
caaaaagaattggatgaaattacagcaaagaggcagaagaaaggcaaacaggaagaagag
aaacctggagaggaaaagacaatcttacatgttaaagaaatgtatgactatcaaggcagg
tcctatcttcacatacctcaggatgttggtgttaatctgcggtcaactgtgccacctgag
aaatgttatcttcccaaaaaacaaattcatgtgtggtctggacacacaaagggcgtcagt
gcagtcagattgtttccactctctggccatttgttgctgtcttgttccatggactgtaaa
attaagctatgggaggtttatggagacaggcgctgtctgcgaacatttattggtcacagt
aaagctgttagggacatctgctttaatactgcaggaacacagttcctcagtgcagcttat
gacaggtatcttaagctctgggacactgagacaggacagtgtatatcaagatttacaaac
cgaaaagtaccttattgtgtcaaatttaatcctgatgaagataagcaaaatctctttgtg
gctgggatgtctgataagaagattgtgcaatgggacattcgaagtggagaaattgtgcag
gaatatgatcggcatctgggagctgtcaacaccattgtttttgtcgatgagaacaggaga
tttgtaagcacatccgatgataagagcctaagagtttgggaatgggatatccctgtggat
ttcaagtatatagcagaacccagtatgcactcaatgcctgcagtgactttgtctccaaat
gggaaatggctagcgtgccaatcaatggacaaccaaatcttaatttttggagcacagaac
agatttagattgaataagaagaaaatttttaagggccatatggtagcaggctatgcttgt
caagtagacttttcaccagacatgagctatgtgatttcaggagatggaaatggaaagtta
aacatctgggactggaagaccacaaaactctacagtagatttaaagctcacgataaagtg
tgtataggtgcagtatggcatcctcatgaaacatctaaagtcataacttgtggttgggat
ggtctcattaaattgtgggattaa
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