Capra hircus (goat): 102183329
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Entry
102183329 CDS
T02910
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like domain-containing protein 1 isoform X2
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
chx
Capra hircus (goat)
Pathway
chx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102183329 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chx03019
]
102183329 (PNLDC1)
Enzymes [BR:
chx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102183329 (PNLDC1)
Messenger RNA biogenesis [BR:
chx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102183329 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
102183329
NCBI-ProteinID:
XP_005685006
LinkDB
All DBs
Position
9:83363900..83387671
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AA seq
531 aa
AA seq
DB search
MDIGADEFEQSLPLLQELVLGADFVGLDIEFTGLRSNLSGPQQISLFDLPSEWYLKTRQS
IQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGVLDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHNILTGNWKVRSSLDKDQIKVVIDEVTRWLDLAEEGDW
MTLPGIAGFQAFEVQLVLRKALPEIWTVLRDQGVIVKKVSTQHRWYLENTSCDRESCWKE
KILLSARGFSVFFQMLVKARKPLVGHNMMMDLLHLHEKFFRPLPESYDEFKLNIHNLFPV
LIDTKNVTKDIWKELNFPRVSNLSEVYEVLNSDLNPTKNSGPVIIHASRCEKYVETKYPH
EAAYDAFLCGSVLLKVAHLLLWKVHSSVPIPEPSFPLYLDVLAPYVNQVNLIRAGVPKIN
FAGPDSPSIRPPILILTVRKWPGVSEQQVYREFQNFCKFDVRRLTRSQFLLMTNKFKDTR
SILKEYKCHPTLRISLYRYWRHSPNVNCLLQVCGVITTWAFIAFLLGGAGP
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacataggcgccgatgagtttgagcagagcctccctctgctgcaggagctcgtcctg
ggcgcggacttcgtgggtctggacatagagttcacgggccttcgttctaacctgtccggg
ccccagcagatcagtctgtttgacttgccatcagagtggtatctaaagacccgtcagagt
attcagcaattcactatctgtcagatcggattgtctgtgttctccagtattgaaggcgag
tcgaacaagtatgtagctcattcttgtaacttcttcctcttccctacaacatttggggtt
ttggactcagagttctctttccaggcttccagtgttcagtttttgaatcagtatggcttc
gactataacaagtttctcaaaaatggaatcccctatatgaacgaagaacaggagaagaaa
attaagcacaacatcctgactgggaactggaaagttcgcagctctctggacaaagaccag
atcaaggtggtgattgacgaggtgacacgctggctggacctggcggaggaaggggactgg
atgaccctccctggtatcgctggcttccaggccttcgaggtccagctcgtactgaggaag
gccctccctgagatctggacagtgcttcgagaccaaggggtgattgtgaagaaggtgagt
acgcagcaccgctggtatcttgagaacacctcctgtgaccgagagagctgctggaaggag
aagatccttctctctgcgaggggcttttctgtgtttttccagatgctggtgaaagcccgg
aagcccttagtgggacataacatgatgatggacctgctgcatctccacgagaagttcttc
aggcctctcccagaaagctacgatgaatttaagctgaatatccacaacctatttcctgtt
ctcattgacaccaagaatgtgacaaaggatatctggaaggaactcaatttcccaagggtt
tcaaatctctcagaagtttatgaagtcctgaacagtgacttgaaccccaccaagaactcc
gggccggtgatcattcacgccagcaggtgtgagaagtacgtggagaccaagtacccccac
gaagcagcgtacgacgccttcctatgcgggtcagttttgttgaaagtggcgcacctgctc
ctgtggaaggtacacagctctgttcccatccccgagcccagcttcccgctctacctggac
gtcctggcgccctatgtgaaccaggtgaatcttatccgagccggggtccccaaaatcaac
tttgcgggcccagactcccctagcatccgcccccccatcctcatcctcaccgtcaggaag
tggccaggggtcagcgagcagcaggtctaccgcgagtttcagaacttctgcaaattcgac
gtcaggaggctcacgcggagccagttcctgctcatgaccaataagttcaaggacactcgg
agcatcctgaaggagtacaagtgccacccgacgctgcggatctccctgtaccgctactgg
agacactccccgaacgtcaactgcctgctacaagtctgcggtgtcattaccacctgggcc
ttcatcgcgtttctcctgggaggagctggcccctga
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