Capra hircus (goat): 102187954
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Entry
102187954 CDS
T02910
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
chx
Capra hircus (goat)
Brite
KEGG Orthology (KO) [BR:
chx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
chx03041
]
102187954 (YTHDC2)
Enzymes [BR:
chx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102187954 (YTHDC2)
Spliceosome [BR:
chx03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102187954 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
AAA_22
Ank
ATPase
PhoH
AAA_7
AAA_16
UvrD-helicase
Ank_4
AAA_29
T2SSE
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
102187954
NCBI-ProteinID:
XP_017909223
EnsemblRapid:
ENSCHIG00000026651
UniProt:
A0A452G8P8
LinkDB
All DBs
Position
10:complement(98790884..98861895)
Genome browser
AA seq
1429 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGGGPAPCCPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGDQ
REMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTH
NTKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKR
GESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPC
RIFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLM
AGDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFG
SCPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENT
FKPESQRQRAIPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKD
VDAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANIHSKASNGW
MALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVQTNGSDLSAEDRELLKAYHHSFDD
EKVDLDLIMHLLYNICHSCEAGAILIFLPGYDEIVGLRDRILFDDKRFADNAHRYQVFML
HSNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVT
MLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTK
LLAPVNCAIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHL
GKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALL
RAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDV
NTNSENWAVVKAALVAGMYPHLVHVDRENVVLAGPKEKKVRFHPTSVLSQPQYKKIPPAN
GQTAAIQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVLVFCGPARLASNALQEPSSFR
ADGIPNDSSDSEMEDRTTANLATLKLDEWLSFKLEPEAASLLLQLRQKWHSLFLRRMRAP
SKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRSNNSRKS
SADTEFSDESTTAERVLMKSPAPTLHQPQKYKDRGILHPKRSTEDRSDQSSVKSTDSSNY
PSPCASPSPPSSGKGSKSPSPKPNMPIRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLN
RAFWESSVVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPF
QFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERLPLGEKTATD
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtctaggccgagcagcgtctccccgcggccgccggctcccggtgggggcgggggcggc
cccgcgccctgttgccctgggggcggcggccgtgccaaggggctgaaggacatccgtata
gacgaggaggtgaagatcgcagtcaatatcgctctggagcgcttccgctatggggaccag
agagaaatggaatttccttcttctttgaccagtacagaaagagcctttattcatcggttg
agtcagtctcttggtttggtttctaaaagtaaaggaaagggagcaaatagatacctaact
gtgaagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgactcat
aatacaaaacatgctgttaggagcctaattcagagatttcctgtcaccaataaagagcgt
actgaacttctgcctaaaacagaaagaggaaatgtgtttgctgttgaagctgaaaatcga
gaaatgagcaagacaagtgggcgactcaacaacggcatacctcagattccagtaaaaaga
ggagaatctgaatttgattctttcagacaatctctgccagtgtttgaaaaacaagaggaa
attgttaaaataattaaggaaaataaagtagttttgattgtaggagaaactggatctgga
aagactacacagattcctcagttccttttagatgattgctttaaaaatggtattccctgc
cgtatattttgtactcaaccaagacgattagcagctattgctgtggctgaaagagttgct
gcagagaggagagaaaggattggtcaaacaattggatatcagatccgtttagaaagcagg
gtttctccaaagacacttctgacattttgcacaaatggggtactgcttcgtacactgatg
gcaggagatagtacattgtcaactgtgacacatgttattgtggatgaagttcatgaaagg
gatcgatttagtgattttttacttacgaagttaagagatttactgcagaagcacccaact
ttgaaactaattctttctagtgctgccttagatgtaaatctttttataagatattttggg
agctgtccagtgatatatatacaaggaagaccatttgaagtaaaagaaatgtttttggaa
gacattttaagaactactggatatacaaacaaagaaatgttaaaatacaaaaaggaaaaa
caacgagaggaaaaacaacaaaccacacttacagaatggtactcagctcaagagaatact
ttcaagcctgaatctcagagacagagagctatcccaaatgtgactgaagagtatgattta
ttggatgatggtggtgacgctgtcttcagtcagctgacagaaaaagatgtgaattgcctt
gaaccatggttaataaaggaaatggatgcttgtctttctgacatatggctgcataaagat
gttgatgcctttgctcaggtctttcaccttattttaactgaaaatgttagtgttgattat
agacatagtgaaaccagtgcaacagctctgatggttgctgcaggacgaggtttctcaagt
caagtagaacagttaattagtatgggagccaatattcatagtaaagcatcaaatggctgg
atggctttagattgggctaaacactttggccagactgaaattgtggatcttctagaatct
tacagtgcttctttggaatttggaaatctggatgaaagctctttggttcaaacaaatggg
agtgatctcagtgcagaagacagagaacttctgaaagcttatcaccatagttttgatgat
gaaaaagtagacttggatttgattatgcatcttctatacaatatctgccatagttgtgaa
gctggtgcaatattgatttttctacctggatatgatgaaattgttggtctgagggatcgc
atcctgtttgatgacaagcggtttgctgataatgcacatagataccaagtctttatgctt
cattcaaatatgcaaacatctgatcaaaagaaggtattaaaaaacccacctgcaggtgtt
cgaaaaataatcctttccaccaatattgctgaaaccagcatcacagtcaatgatgttgtc
tttgttattgattctggtaaggtgaaagagaaatcctttgatgcactgaattttgttaca
atgttaaaaatggtatggatttccaaagctagcgccatacaacgaaaaggcagggcaggg
cggtgcagacctggaatttgtttccgactgttcagtagacttcgattccagaatatgttg
gaatttcagactccagaacttttgagaatgccattacaggaactgtgtttacataccaag
ctgttagccccagttaattgtgctattgctgatttccttatgaaagctcctgaacctcca
ccagctttaattgtaagaaatgctgtacaaatgcttaagacaatagatgcaatggatgca
tgggaagatctcactgaacttggatatcatttggctgacttgccagtagagccacatctt
ggtaaaatggtcctgtgtgctgttgttttgaagtgtctggatcccatccttaccattgcc
tgcacactagcttatcgagatcctttcgtcctgccaactcaggcctctcagaaacgtgca
gctatgctttgtaggaaacgtttcactgcaggaactttcagtgaccacatggcacttctc
agagcattccaggcatggcagaaagctcgaagtgatgggtgggagcgagccttttgtgaa
aagaattttctttcacaagctaccatggaaataatcataggcatgagaactcagttgctt
ggtcaacttagagcatcaggttttgtgagagcaagaggtggtggtgacattcgagatgtt
aacacaaattctgagaattgggccgttgttaaagctgcgttggttgcaggcatgtatcct
catttagttcatgtggacagagagaatgtagtattggcagggccaaaggagaaaaaagta
cggtttcatcccacttcagttctcagtcagcctcaatataaaaagattcctccagcaaac
ggtcaaactgcagcaatccaggcactgcccacagattggcttatttatgatgaaatgact
agagctcataggatagctaatattagatgctgttcagcagtgacgcctgtcactgtgttg
gtattttgtggaccagctaggttggcaagtaatgctcttcaggaaccttcatcttttcgt
gcggatggtattcctaatgacagtagtgatagtgaaatggaagacaggactactgctaat
ttggcaactttaaaacttgatgagtggctcagtttcaaactagagccagaggcagccagt
ttattgctgcaacttagacagaagtggcacagcttatttttacgtcgaatgagagctcca
tccaaaccttggtctcaagttgatgaagctactataagagcaattatagctgttttaagc
actgaagaacaatctgcaggtttacaacagccatctgggattggccaaaggccaagacct
atgtcttcagaagaacttcctttggcatcatcttggaggtcaaataatagtagaaaaagt
tcagcagatactgaattttctgatgagtctactactgcagaaagagtactgatgaaatct
ccagctccaacactacaccaacctcagaagtataaagatagaggaattttgcatcctaaa
cgaagcactgaggaccggtcagatcaatcttctgtgaaatctacagacagcagtaattat
ccaagtccttgtgctagtccttctcctccatcctcaggaaagggctcaaagtctccttca
ccaaaaccaaacatgcctattcgatacttcataatgaagagtagcaatctgagaaacctt
gaaatttctcaacagaagggtatctggtctacaactcctagtaatgagcggaagctaaat
cgagccttttgggaaagcagcgtggtgtacttggtattttctgttcaaggatctgggcat
ttccagggattttctagaatgtcttctgagataggaagagagaagagtcaggattggggc
tcagctggactaggaggagtgtttaaggtggagtggatacggaaagaaagtcttcccttt
cagtttgcacaccatttgctcaatccttggaatgacaacaagaaagtccagataagcaga
gatgggcaggaactagaacctcaggttggtgaacagttgctccagttatgggaacgcctt
ccattgggagaaaaaaccgcaactgattaa
DBGET
integrated database retrieval system
