Carboxydothermus hydrogenoformans: CHY_0229
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Entry
CHY_0229 CDS
T00287
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
chy
Carboxydothermus hydrogenoformans
Pathway
chy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHY_0229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chy03019
]
CHY_0229
03009 Ribosome biogenesis [BR:
chy03009
]
CHY_0229
Enzymes [BR:
chy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CHY_0229
Messenger RNA biogenesis [BR:
chy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CHY_0229
Ribosome biogenesis [BR:
chy03009
]
Prokaryotic type
rRNA helicases
CHY_0229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
PhoH
Cas3-like_C_2
AAA_22
CMS1
CobA_CobO_BtuR
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABB13920
UniProt:
Q3AFI3
LinkDB
All DBs
Position
196711..198003
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AA seq
430 aa
AA seq
DB search
MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV
LQRIQRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGV
EVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLF
SATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPI
QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAA
RGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKLLKAIEEAINK
RLKREILPEPVDLEEARFKKIAKKILDTITKGVPALYLEMAARLLEEEESEQLLGATLYL
LEDRSLQNDF
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atggaagagtttaaaaaattgggattaatcacaccgcttttaaaagcggtgaacgacctg
gggtttgaaatgcctactcccattcaaaaggaggctattccacttattttagaaggacat
aacctggtgggtcaggctcctaccggaaccggaaaaaccgctgcttaccttttaccggtg
ttacaaagaattcagcggggaaagaaagctcaagtgttgatcgttactccgacccgggag
ctggcactgcaggtggccgatgaagtggccaaactcggaaaatatcttaaagtccgggct
ctggcggtatacggcggccaggctattgagcggcaaatccggggacttcgccagggggta
gaagtgattgtggggaccccgggacgaatcttagaccatatcggccggaagacttttccg
gcggcagagatcaaaatcgttatcctggacgaagccgatgaaatgctggatatgggtttt
atcgatgatatcgaggcaattttaaataccctgaccaaccgccagcaaaccttgcttttc
tcggcaacgctgccggctccaataaaaaccataattaaaaagtttttaggggggtataaa
acggttaaactggttggcagggaaaaaaccgtgccggcgattcgccaggtatattacgag
cttccggaaacggaaaaaatcgagggacttgtcagtatcttaaacagcgagctacccatc
caggctattgtgttttgtcgcaccaaaaagcgggttgatgaggtagtagagcaattaaac
tttcggggttatgcagctaaaggattgcacggggatatgagccagcgggaacgcactcag
accattaaaagctttaaagccgggaaaaccgaacttttggtggctaccgatgtagccgcc
cggggccttgacattcccgatgtttcccatgtcatcaatttcgatattccccagaacccg
gaaagctatatccaccgtattggacgtaccggccgggcgggcagggaaggaaaggccatt
accctgattaactaccgggaaagaaagcttttaaaagccatagaagaggcaataaataag
cgcttaaagcgggaaatactgccggagccggtggatttggaagaagccagattcaaaaaa
attgccaagaaaattctggataccattaccaaaggggtaccggctttgtatctggaaatg
gcggccagacttttagaagaggaagagtcggagcagcttttaggggcaactttgtatctt
ctggaagatcggtctttacagaatgatttttag
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