Carboxydothermus hydrogenoformans: CHY_0258
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Entry
CHY_0258 CDS
T00287
Symbol
uvrB
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
chy
Carboxydothermus hydrogenoformans
Pathway
chy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CHY_0258 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chy03400
]
CHY_0258 (uvrB)
DNA repair and recombination proteins [BR:
chy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CHY_0258 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CHY_0258 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
DEAD
UVR
AAA_30
UvrD-helicase
AAA_22
DUF8042
YqxI
DUF8810
EncFtn-like
Motif
Other DBs
NCBI-ProteinID:
ABB14660
UniProt:
Q3AFF4
LinkDB
All DBs
Position
219819..221807
Genome browser
AA seq
662 aa
AA seq
DB search
MERFLLKANYTPKGDQPKAIKELTEGIEKGLKMQTLLGVTGSGKTFTMANVIANVNKPTL
VIAPNKTLAAQLCAEFREFFPENAVEYFVSYYDYYQPEAYLPATDTYIEKDSAINDEIDK
LRHSATAALFERRDVIIVASVSCIYGLGDPQEYRELLLSVRKGQIYEREAILRKLVDIQY
ERNEYDLTRGKFRVRGDVIEVFPASYTDRAVRIELFGDEVDRILEFDTLTGEIIGELKHV
AIFPASHFATSKEKLERAIKSIEEELEERLRYFEERGKLLEAQRLKQRTLYDIEMLREVG
YTKGIENYSRHLTGRKPGEPPYTLIDYFPKDFLMIIDESHITIPQIRGMYEGDRSRKEAL
VEYGFRLPSAFDNRPLKFHEFEARINQVVFVSATPGPYELKHSQKIVEQIIRPTGLVDPE
VEVRPTRGQVDDLYGEIKERVARNERVLVTTLTKKMAEDLTEYFREMGVKVRYLHSDIDT
LERVEILRDLRLGVFDVLVGINLLREGLDLPEVSLVAILDADKEGYLRSERSLIQTIGRA
ARNVNGKVIMYADTVTASMQKAIDETNRRRKLQMEYNRKHGITPQTVQKAVRDVIEATRA
VTAELPEVKRDFIQKMSAKEFKQYVEKLTREMKEAAKALEFEKAAMLRDLIIELRAQKAV
KK
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggaacgttttttgttaaaagcaaattatacgcccaagggagatcaacccaaagccata
aaggaacttaccgaagggattgagaaggggctaaaaatgcagacccttctgggggtaacc
ggttctgggaaaacttttaccatggccaatgtgattgccaatgtaaacaagcccacttta
gtaattgcacccaataaaacgctggcggcccagctttgtgcggagttcagggagtttttt
cccgaaaacgcggtggagtattttgtaagctactacgattactatcaaccggaagcttac
ttaccggccaccgatacgtatatagaaaaagactcggctataaacgatgaaattgataaa
ctccgccattcagcaacggcggcgctttttgaacggcgggatgttattatcgtggcatcg
gtctcctgcatttacggtttaggggatccccaggaatatcgggaacttctactttccgtt
agaaaagggcagatttacgagcgggaagcaattttaagaaagcttgtagatattcagtat
gagcggaatgagtacgacttaacccgggggaaatttcgggtaagaggggatgtaattgaa
gtttttccggcgtcgtataccgaccgggcggtgcgcatcgagctttttggcgatgaggtg
gataggattttagaatttgatactttaacgggagagattatcggggagctaaaacacgtg
gccatttttccggcaagccactttgctacttccaaagaaaagttagaacgggcgataaaa
agcattgaagaagagcttgaagaacggcttcgctattttgaagagcggggcaaactcctt
gaagcccagcgtttaaagcagaggaccttgtacgatattgaaatgctgcgggaagtaggt
tacactaaaggaattgaaaactattcccggcatttaaccggaagaaaacccggcgagcct
ccctatacgttaattgattattttcccaaagattttcttatgattattgatgaaagccat
ataacgattccccagattcgggggatgtatgaaggggaccgctcccggaaggaggcgctg
gtggagtacggttttcgcctgccttcggcctttgacaaccggccactgaaatttcatgag
tttgaagcaagaattaaccaggtagtgtttgtttcggctactcccggaccctatgagtta
aagcattctcaaaagattgtggagcagattatccggccgacggggctggttgaccccgag
gtagaagttcgacccacccgggggcaggtggatgacctctacggggaaattaaagagcgg
gtagcccgaaacgagcgggtgctggtaaccaccctcaccaagaagatggccgaggacctg
accgagtatttccgggagatgggagtgaaggtccggtaccttcattcggatattgatacc
ctggaacgggttgaaatcctgcgagacttaaggctgggagtttttgatgttttggtggga
ataaacctcctcagggaaggtctggatttacccgaagttagcctggtggccattttggat
gccgacaaggaagggtatttacgttcggaacgctctttaatccaaaccatcggacgggcg
gcgcggaacgtaaacggcaaagtaatcatgtatgccgataccgttaccgcttccatgcaa
aaagccattgatgaaaccaaccggcgccgtaaacttcagatggaatacaaccggaagcac
ggaataacgccgcaaacggtgcaaaaggcggtaagggatgttattgaggcgaccagggcg
gtgactgcagaactaccggaagtaaagcgggatttcatccagaaaatgagtgcgaaagag
tttaagcagtatgtggaaaaacttacccgggaaatgaaagaagcagctaaagctttggag
tttgaaaaagcggcgatgctgcgcgacttaataattgagcttcgggcgcaaaaggcggtc
aaaaagtaa
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